# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1pmjX	185	5.131	b.18.1.18	104194
1pmhX	185	8.149	b.18.1.18	104193
1q2bA	434	9.864	b.29.1.10	95624
2z2nA	299	10.89		
2g8sA	353	13.83		
1ppjB	439	14.96	d.185.1.1,d.185.1.1	104254,104255
1xynA	178	16.66	b.29.1.11	24322
2q9uA	414	17.40		
1d9cA	121	18.71	a.26.1.3	16901
2dpyA	438	20.74		
1q7fA	286	23.02	b.68.9.1	96036
1lfcA	25	25.55	j.3.1.5	46074
1u0tA	307	27.10	e.52.1.1	107567
1oh4A	179	27.53	b.18.1.18	92978
1pjxA	314	30.93	b.68.6.1	104167
1ca1A	370	32.63	a.124.1.1,b.12.1.3	19340,23648
2nlvA	112	32.80	d.326.1.1	138362
2v3iA	434	34.52		
2b9kA	47	36.63		
1yt5A	258	38.94		
1khoA	370	40.52	a.124.1.1,b.12.1.3	72489,72490
2yyoA	171	41.45		
1icfI	65	42.33	g.28.1.1	44958
1fna	93	42.53		
1ppjE	196	42.83	b.33.1.1,f.23.12.1	104260,104261
2fcrA	173	43.04	c.23.5.1	31151
1rwiA	270	43.61	b.68.9.1	97987
2il5A	171	43.78		
1f1gA	154	44.25	b.1.8.1	76153
1pkoA	139	45.32	b.1.1.1	88147
2v31A	112	49.20		
2an1A	292	49.77		
1v04A	355	50.14	b.68.6.2	100240
2ghsA	326	50.76	b.68.6.1	135209
1hp1A	516	51.11	d.114.1.1,d.159.1.2	70976,70977
1a22B	238	53.74	b.1.2.1,b.1.2.1	22003,22004
1ag9A	175	56.51	c.23.5.1	31178
2dbjA	124	57.72		
1xnkA	196	57.84	b.29.1.11	122195
2r7eA	742	59.66		
2bngA	149	61.93		
1ca1	370	62.71		
2vgnA	386	62.96		
1gm6A	175	63.27	b.60.1.1	70272
1x89A	178	63.97	b.60.1.1	121799
1bj7	156	67.84		
1wj9A	211	68.09	d.58.53.1,d.58.53.1	114694,114695
1xkiA	162	68.79	b.60.1.1	115408
1qhoA	686	69.80	b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1	21844,22513,27751,28738
1e5pA	151	69.93	b.60.1.1	59272
1pvxA	194	70.15	b.29.1.11	24341
2p4oA	306	70.15		
1bhpA	45	73.60	g.13.1.1	44626
2geyA	158	73.77		
1gjwA	637	75.06	b.71.1.1,c.1.8.1	60582,60583
1axiB	236	75.14	b.1.2.1,b.1.2.1	21997,21998
2bjfA	329	75.66		
2z4iA	233	77.17		
2rb8A	104	77.66		
1bhp	45	78.68		
1chkA	238	78.82	d.2.1.7	36999
2hrgA	496	79.21		
2dtrA	226	81.76	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
2avxA	171	82.19		
1gcqC	70	82.33	b.34.2.1	60436
1gpiA	431	82.53	b.29.1.10	65450
1xsoA	150	85.93	b.1.8.1	22273
2fmmA	74	85.98	b.34.13.2	133782
2h41A	95	87.25		
1mjcA	69	87.83	b.40.4.5	25319
2piaA	321	89.05	b.43.4.2,c.25.1.2,d.15.4.2	25663,31553,37704