# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2z2nA 299 2.283 2ghsA 326 2.747 b.68.6.1 135209 2q9uA 414 5.635 1pmjX 185 7.730 b.18.1.18 104194 1q2bA 434 8.934 b.29.1.10 95624 1q7fA 286 10.27 b.68.9.1 96036 1pmhX 185 12.19 b.18.1.18 104193 1lfcA 25 12.28 j.3.1.5 46074 1ppjB 439 12.38 d.185.1.1,d.185.1.1 104254,104255 2hrgA 496 12.59 2jyeA 72 13.15 2p4oA 306 13.61 1rwiA 270 14.10 b.68.9.1 97987 1f1gA 154 15.35 b.1.8.1 76153 2z0qA 346 15.39 2dpyA 438 16.23 2il5A 171 18.89 1hp1A 516 19.38 d.114.1.1,d.159.1.2 70976,70977 2fcrA 173 20.61 c.23.5.1 31151 2dbjA 124 22.54 1ppjE 196 22.72 b.33.1.1,f.23.12.1 104260,104261 2ddzA 190 23.45 2qpwA 149 23.46 2r2oA 138 27.42 1ag9A 175 27.47 c.23.5.1 31178 3bi1A 709 28.85 1gm6A 175 28.87 b.60.1.1 70272 2b9kA 47 28.93 2pp6A 102 28.97 1pjxA 314 29.62 b.68.6.1 104167 1yovA 537 30.53 c.111.1.2 123785 2v3iA 434 33.03 2oq0A 206 33.61 1npeA 267 33.81 b.68.5.1 92032 1d9cA 121 36.07 a.26.1.3 16901 1pkoA 139 36.30 b.1.1.1 88147 2qt6A 498 37.04 1gpiA 431 38.06 b.29.1.10 65450 2hazA 105 38.45 b.1.2.1 136303 1wisA 124 39.20 b.1.2.1 120975 1wlmA 151 43.50 a.39.1.11 121008 1xsoA 150 44.29 b.1.8.1 22273 1e5pA 151 46.38 b.60.1.1 59272 2r7eA 742 47.24 1u0tA 307 48.04 e.52.1.1 107567 2uv0E 175 48.50 1u2hA 99 48.93 1vzyA 291 49.12 d.193.1.1,g.81.1.1 114042,114043 1icfI 65 50.37 g.28.1.1 44958 2cayA 145 51.54 b.55.1.12 130167 2piaA 321 51.98 b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 2z2mC 125 52.57 2cx5A 158 52.75 1bj7 156 52.85 1fna 93 52.93 1erjA 393 53.75 b.69.4.1 27660 2avxA 171 54.19 2sliA 679 54.77 b.29.1.9,b.68.1.1 24274,27611 1yqzA 438 54.88 2nygA 273 55.24 1sphA 88 57.04 d.94.1.1 40544 1an8 208 57.15 1vqoK 132 59.83 b.39.1.1 120372 1hbnB 442 60.00 a.89.1.1,d.58.31.2 60900,60901 1gx3A 284 62.73 d.3.1.5 70678 1y8xB 98 64.09 2f6eA 127 64.15 1f8eA 388 64.47 b.68.1.1 59694 2a38A 194 65.33 1oh4A 179 65.40 b.18.1.18 92978 1mfmA 153 67.04 b.1.8.1 22246 1ptfA 88 68.09 d.94.1.1 40549 1uuqA 440 69.41 c.1.8.3 100015 2zc3C 125 69.88 2an1A 292 70.59 2ic2A 115 70.88 b.1.2.1 137233 3bh0A 315 72.24 1ogdA 131 72.46 c.133.1.1 92893 1vk1A 242 72.48 d.268.1.2 108634 2arcA 164 72.66 b.82.4.1 28148 1zd0A 150 73.07 d.329.1.1 124927 1e6yB 433 73.63 a.89.1.1,d.58.31.2 18535,39453 1rfs 139 73.92 2o1rA 81 74.01 1oboA 169 75.75 c.23.5.1 86776 2fmmA 74 76.85 b.34.13.2 133782 1ur4A 399 77.15 c.1.8.3 113402 1bhpA 45 77.74 g.13.1.1 44626 3bn1A 373 79.07 1xkiA 162 79.32 b.60.1.1 115408 2uvkA 357 79.37 1zc1A 208 79.73 2yyoA 171 80.76 1ijqA 316 81.41 b.68.5.1,g.3.11.1 62506,62507 2j8gA 339 81.54 1bhp 45 83.25 2fqmA 75 83.56 2z0xA 158 86.50 1qjkA 36 86.69 g.46.1.1 45345 2z4iA 233 87.46 1cyx 205 89.20