# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2z2nA	299	4.717		
1q7fA	286	6.000	b.68.9.1	96036
2fcrA	173	6.885	c.23.5.1	31151
1d9cA	121	10.84	a.26.1.3	16901
1ppjB	439	12.79	d.185.1.1,d.185.1.1	104254,104255
1rwiA	270	16.94	b.68.9.1	97987
1lfcA	25	18.42	j.3.1.5	46074
1bhpA	45	18.86	g.13.1.1	44626
1bhp	45	20.25		
1oh4A	179	20.78	b.18.1.18	92978
2g8sA	353	23.15		
2p4oA	306	24.88		
2q9uA	414	26.25		
1pmjX	185	27.39	b.18.1.18	104194
1ag9A	175	29.58	c.23.5.1	31178
1hp1A	516	29.72	d.114.1.1,d.159.1.2	70976,70977
1q2bA	434	29.76	b.29.1.10	95624
1ppjE	196	32.12	b.33.1.1,f.23.12.1	104260,104261
1pkoA	139	32.50	b.1.1.1	88147
1xynA	178	34.76	b.29.1.11	24322
2avxA	171	35.68		
1bhuA	102	36.09	b.11.1.3	23631
1pmhX	185	36.18	b.18.1.18	104193
1icfI	65	38.48	g.28.1.1	44958
1pjxA	314	38.73	b.68.6.1	104167
2bmvA	164	40.51		
1v04A	355	42.89	b.68.6.2	100240
1wj9A	211	45.11	d.58.53.1,d.58.53.1	114694,114695
2uv0E	175	46.59		
2geyA	158	48.33		
2hrgA	496	48.41		
1zd0A	150	48.47	d.329.1.1	124927
1gx3A	284	49.31	d.3.1.5	70678
1fna	93	50.38		
1y8qA	346	50.58		
2an1A	292	52.58		
2il5A	171	53.07		
2ic2A	115	53.77	b.1.2.1	137233
1u0tA	307	54.11	e.52.1.1	107567
1a0tP	413	58.12	f.4.3.2	43794
1t6nA	220	60.84	c.37.1.19	106576
2dpyA	438	61.03		
2f1nA	262	61.07	d.151.1.1	132782
2ghsA	326	66.30	b.68.6.1	135209
1qdeA	224	67.33	c.37.1.19	32410
2v31A	112	69.15		
1e5pA	151	69.30	b.60.1.1	59272
1ar61	302	70.79		
1ijqA	316	71.63	b.68.5.1,g.3.11.1	62506,62507
2qq9A	226	71.83		
1an8	208	72.31		
3ct5A	159	72.49		
3bh0A	315	73.81		
2hazA	105	74.12	b.1.2.1	136303
2pl3A	236	74.32		
1khoA	370	75.82	a.124.1.1,b.12.1.3	72489,72490
1wlmA	151	75.93	a.39.1.11	121008
2q07A	306	76.97		
2dbjA	124	77.27		
1vecA	206	79.18	c.37.1.19	100575
2bngA	149	79.58		
2dtrA	226	81.34	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1oboA	169	82.01	c.23.5.1	86776
1f1gA	154	82.32	b.1.8.1	76153
1xnkA	196	83.44	b.29.1.11	122195
2glxA	332	84.84		
2z0qA	346	85.38		
1yovA	537	86.96	c.111.1.2	123785
1qjkA	36	87.43	g.46.1.1	45345
1wrbA	253	88.85	c.37.1.19	121192