# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2z2nA	299	5.800		
1q7fA	286	6.193	b.68.9.1	96036
2fcrA	173	9.97	c.23.5.1	31151
1bhpA	45	11.07	g.13.1.1	44626
1ppjB	439	11.97	d.185.1.1,d.185.1.1	104254,104255
1bhp	45	12.01		
1d9cA	121	15.49	a.26.1.3	16901
1lfcA	25	20.25	j.3.1.5	46074
1hp1A	516	21.60	d.114.1.1,d.159.1.2	70976,70977
1rwiA	270	24.75	b.68.9.1	97987
1oh4A	179	25.09	b.18.1.18	92978
1q2bA	434	27.21	b.29.1.10	95624
2q9uA	414	28.62		
1pmjX	185	29.47	b.18.1.18	104194
2p4oA	306	30.04		
1xynA	178	31.55	b.29.1.11	24322
1ag9A	175	32.41	c.23.5.1	31178
2avxA	171	32.74		
2g8sA	353	33.64		
2uv0E	175	34.44		
1zd0A	150	35.86	d.329.1.1	124927
2hrgA	496	37.89		
1icfI	65	39.17	g.28.1.1	44958
1ppjE	196	39.34	b.33.1.1,f.23.12.1	104260,104261
2f1nA	262	39.92	d.151.1.1	132782
1v04A	355	40.19	b.68.6.2	100240
1wj9A	211	40.21	d.58.53.1,d.58.53.1	114694,114695
1pmhX	185	40.36	b.18.1.18	104193
2bmvA	164	43.21		
2geyA	158	44.22		
1pkoA	139	44.43	b.1.1.1	88147
1pjxA	314	47.31	b.68.6.1	104167
2il5A	171	47.38		
1wlmA	151	47.44	a.39.1.11	121008
1bhuA	102	47.52	b.11.1.3	23631
2dpyA	438	48.70		
1qdeA	224	51.40	c.37.1.19	32410
1fna	93	51.77		
1gx3A	284	52.37	d.3.1.5	70678
1ar61	302	55.79		
1u0tA	307	56.62	e.52.1.1	107567
2an1A	292	58.60		
1y8qA	346	58.68		
1vflA	356	60.26	c.1.9.1	120041
3bh0A	315	64.78		
2ic2A	115	66.02	b.1.2.1	137233
1a0tP	413	66.68	f.4.3.2	43794
1t6nA	220	68.53	c.37.1.19	106576
2dbjA	124	69.34		
2qq9A	226	69.72		
2v31A	112	70.76		
2hazA	105	71.52	b.1.2.1	136303
2q07A	306	72.01		
2ghsA	326	72.24	b.68.6.1	135209
1vecA	206	73.80	c.37.1.19	100575
3ct5A	159	76.97		
1chkA	238	77.33	d.2.1.7	36999
2vgnA	386	81.06		
3borA	237	81.59		
2dtrA	226	81.82	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
2bngA	149	82.18		
2v3iA	434	82.66		
1yovA	537	83.76	c.111.1.2	123785
1oboA	169	84.18	c.23.5.1	86776
2pl3A	236	85.57		
1qjkA	36	87.54	g.46.1.1	45345
1lnsA	763	88.53	a.40.2.1,b.18.1.13,c.69.1.21	78101,78102,78103
1f1gA	154	88.60	b.1.8.1	76153
1khoA	370	89.28	a.124.1.1,b.12.1.3	72489,72490