# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2p4oA 306 1.626 1zu0A 529 2.142 1nrwA 288 2.985 c.108.1.10 86128 2z8lA 208 3.734 2uvkA 357 3.878 2q8xA 331 3.950 2z2nA 299 4.416 2hrgA 496 5.660 1q7fA 286 6.414 b.68.9.1 96036 2hesX 330 7.150 1q2bA 434 7.776 b.29.1.10 95624 1j1tA 233 8.935 b.29.1.18 90771 1erjA 393 10.14 b.69.4.1 27660 2piaA 321 14.02 b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 1lkdA 297 14.71 d.32.1.3,d.32.1.3 78059,78060 1chkA 238 16.73 d.2.1.7 36999 1qwyA 291 20.69 b.84.3.2 96509 1z9tA 255 23.31 2pia 321 23.60 1v33A 366 23.64 d.264.1.1 100278 1l5aA 436 23.95 c.43.1.2,c.43.1.2 75923,75924 1mfmA 153 26.95 b.1.8.1 22246 2dt4A 143 27.32 1f20A 435 27.77 b.43.4.1,c.25.1.4 64932,64933 3borA 237 29.92 2ieaA 886 31.26 c.36.1.6,c.36.1.10,c.48.1.1 137294,137295,137296 1zd0A 150 31.31 d.329.1.1 124927 1oh4A 179 31.76 b.18.1.18 92978 2d5lA 706 32.25 2hu5A 582 36.19 b.69.7.2,c.69.1.33 136763,136764 2yv8A 164 36.45 2r9qA 370 37.21 2ghsA 326 37.93 b.68.6.1 135209 1wisA 124 38.42 b.1.2.1 120975 2pywA 420 40.85 2aq2B 237 40.94 b.40.2.2,d.15.6.1 127146,127147 1mi4A 427 41.13 d.68.2.2 79141 2fauA 341 41.37 2ef0A 301 41.94 1m4vA 204 41.97 b.40.2.2,d.15.6.1 74459,74460 1icfI 65 44.17 g.28.1.1 44958 1gycA 499 45.71 b.6.1.3,b.6.1.3,b.6.1.3 70748,70749,70750 1gnlA 544 47.24 e.26.1.1 70287 1ms9A 648 47.52 b.29.1.15,b.68.1.1 85088,85089 1q87A 221 48.53 e.47.1.1 96192 2guyA 478 48.63 b.71.1.1,c.1.8.1 135754,135755 2i5nH 258 49.12 b.41.1.1,f.23.10.1 137064,137065 1jsdB 176 49.13 h.3.1.1 63259 2ar5A 121 52.19 3b9tA 484 52.94 3b5lB 198 54.46 3bfvA 271 54.67 2ifrA 206 54.82 b.29.1.20 137346 1x8qA 184 55.09 b.60.1.1 114966 1u2hA 99 57.00 2qgmA 445 57.09 1wj9A 211 58.51 d.58.53.1,d.58.53.1 114694,114695 1jofA 365 58.53 b.69.10.1 71775 2eutA 294 58.55 a.93.1.1 132407 1r5mA 425 60.48 1d9cA 121 60.89 a.26.1.3 16901 1lfcA 25 61.08 j.3.1.5 46074 2h41A 95 61.43 2qe8A 343 61.58 2fgeA 995 62.10 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1dxrH 258 63.03 b.41.1.1,f.23.10.1 25456,43433 1ag9A 175 64.80 c.23.5.1 31178 1pkoA 139 65.26 b.1.1.1 88147 1qx4A 274 65.80 b.43.4.2,c.25.1.1 104624,104625 2q16A 219 65.97 1xynA 178 66.26 b.29.1.11 24322 1h2wA 710 67.14 b.69.7.1,c.69.1.4 76596,76597 1gntA 553 67.20 e.26.1.1 70290 2gp5A 349 68.55 2g1iA 563 68.77 2jrfA 184 69.97 1w4rA 195 70.11 1rfs 139 70.91 1bhuA 102 70.97 b.11.1.3 23631 1y2tA 142 71.55 b.97.1.2 116407 1v10A 521 73.25 b.6.1.3,b.6.1.3,b.6.1.3 108224,108225,108226 2geeA 203 73.60 2yvwA 425 73.96 3btxA 204 74.87 1sr4A 206 75.19 b.42.2.1 105948 1vflA 356 80.09 c.1.9.1 120041 1ppjB 439 80.25 d.185.1.1,d.185.1.1 104254,104255 2yyoA 171 80.85 1fna 93 81.86 2e7uA 424 82.83 3sebA 238 83.48 b.40.2.2,d.15.6.1 25184,37773 2nrkA 173 83.53 1k3iA 656 84.05 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 1tqyA 424 84.36 c.95.1.1,c.95.1.1 107245,107246 2f2uA 402 85.67 2q7nA 488 85.78 1eerB 227 86.59 b.1.2.1,b.1.2.1 22011,22012 2cx5A 158 88.61 1xx1A 285 88.61 1zjaA 557 89.04 1bvyF 191 89.71 c.23.5.1 31207