# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fcrA	173	3.383	c.23.5.1	31151
2z2nA	299	8.553		
1ag9A	175	12.77	c.23.5.1	31178
1ppjB	439	13.06	d.185.1.1,d.185.1.1	104254,104255
1q7fA	286	13.77	b.68.9.1	96036
1lfcA	25	16.96	j.3.1.5	46074
1d9cA	121	17.57	a.26.1.3	16901
1xynA	178	19.96	b.29.1.11	24322
2hrgA	496	22.29		
1pmjX	185	23.09	b.18.1.18	104194
1q2bA	434	25.60	b.29.1.10	95624
1oh4A	179	25.81	b.18.1.18	92978
1bhpA	45	27.10	g.13.1.1	44626
2bmvA	164	29.66		
1bhp	45	29.67		
2f1nA	262	29.67	d.151.1.1	132782
1pjxA	314	30.16	b.68.6.1	104167
2dpyA	438	30.32		
1bhuA	102	30.97	b.11.1.3	23631
2p4oA	306	31.99		
2q9uA	414	34.76		
2ic2A	115	35.37	b.1.2.1	137233
1pmhX	185	37.01	b.18.1.18	104193
1icfI	65	38.81	g.28.1.1	44958
1rwiA	270	42.47	b.68.9.1	97987
1wj9A	211	44.92	d.58.53.1,d.58.53.1	114694,114695
2avxA	171	45.14		
1pkoA	139	46.71	b.1.1.1	88147
1hp1A	516	48.24	d.114.1.1,d.159.1.2	70976,70977
1oboA	169	48.60	c.23.5.1	86776
2geyA	158	48.65		
1fna	93	50.11		
1a0tP	413	52.00	f.4.3.2	43794
1ppjE	196	53.24	b.33.1.1,f.23.12.1	104260,104261
2uv0E	175	55.45		
2b9kA	47	59.66		
1f1gA	154	60.58	b.1.8.1	76153
2r7eA	742	64.76		
1v04A	355	67.43	b.68.6.2	100240
2v31A	112	67.46		
1wisA	124	67.97	b.1.2.1	120975
1vflA	356	69.24	c.1.9.1	120041
2g8sA	353	70.06		
1khoA	370	72.17	a.124.1.1,b.12.1.3	72489,72490
2il5A	171	72.44		
2dbjA	124	73.80		
2qt6A	498	74.25		
2ghsA	326	74.54	b.68.6.1	135209
2q07A	306	76.29		
2yyoA	171	76.87		
1ar61	302	79.63		
2dtrA	226	83.42	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1u0tA	307	85.06	e.52.1.1	107567
1xsoA	150	85.32	b.1.8.1	22273
2nlvA	112	87.28	d.326.1.1	138362
1y8qA	346	87.55		
1gx3A	284	87.60	d.3.1.5	70678
1an8	208	89.80