# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fcrA	173	3.186	c.23.5.1	31151
2z2nA	299	6.781		
1d9cA	121	14.43	a.26.1.3	16901
1q7fA	286	15.08	b.68.9.1	96036
1ppjB	439	15.34	d.185.1.1,d.185.1.1	104254,104255
2q9uA	414	16.28		
1lfcA	25	16.62	j.3.1.5	46074
1pmjX	185	19.07	b.18.1.18	104194
1ag9A	175	19.82	c.23.5.1	31178
1pjxA	314	22.57	b.68.6.1	104167
1oh4A	179	23.42	b.18.1.18	92978
1bhpA	45	24.49	g.13.1.1	44626
1pmhX	185	24.93	b.18.1.18	104193
1pkoA	139	26.31	b.1.1.1	88147
1bhp	45	26.82		
2dpyA	438	28.01		
2avxA	171	29.73		
1hp1A	516	29.94	d.114.1.1,d.159.1.2	70976,70977
2hrgA	496	33.64		
1rwiA	270	35.31	b.68.9.1	97987
2p4oA	306	38.24		
1bhuA	102	39.16	b.11.1.3	23631
2ghsA	326	39.51	b.68.6.1	135209
1gx3A	284	41.81	d.3.1.5	70678
1q2bA	434	43.33	b.29.1.10	95624
1oboA	169	43.89	c.23.5.1	86776
2il5A	171	44.67		
1xynA	178	44.79	b.29.1.11	24322
2uv0E	175	48.11		
2v31A	112	52.84		
1ppjE	196	53.63	b.33.1.1,f.23.12.1	104260,104261
1an8	208	55.85		
1f1gA	154	56.26	b.1.8.1	76153
1vflA	356	57.45	c.1.9.1	120041
1vk1A	242	59.47	d.268.1.2	108634
1e6yB	433	59.62	a.89.1.1,d.58.31.2	18535,39453
1wj9A	211	61.25	d.58.53.1,d.58.53.1	114694,114695
1hbnB	442	62.33	a.89.1.1,d.58.31.2	60900,60901
2z0qA	346	62.75		
2q07A	306	64.71		
1fna	93	65.50		
1icfI	65	67.41	g.28.1.1	44958
1wisA	124	67.65	b.1.2.1	120975
1ijqA	316	70.65	b.68.5.1,g.3.11.1	62506,62507
1npeA	267	74.57	b.68.5.1	92032
2bmvA	164	78.09		
2hazA	105	78.79	b.1.2.1	136303
1v04A	355	79.17	b.68.6.2	100240
1xsoA	150	82.77	b.1.8.1	22273
2dtrA	226	82.78	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
2ic2A	115	83.23	b.1.2.1	137233
2qq9A	226	85.77		
1gm6A	175	85.80	b.60.1.1	70272
2dbjA	124	86.32		
1zd0A	150	86.79	d.329.1.1	124927
2f1nA	262	87.10	d.151.1.1	132782
2nygA	273	87.21		
3bedA	142	87.60		
2b9kA	47	88.23		
2g8sA	353	88.88