# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2zbvA 263 2.264 2pp6A 102 3.078 2oezA 247 6.311 1vlyA 338 6.589 b.44.2.1,d.250.1.1 108871,108872 1cqqA 180 9.570 b.47.1.4 26422 1mjcA 69 9.667 b.40.4.5 25319 1pmjX 185 10.06 b.18.1.18 104194 2f6eA 127 10.13 1wm3A 72 10.46 d.15.1.1 114736 1i8aA 189 11.44 b.1.9.2 61951 1js8A 394 13.00 a.86.1.1,b.112.1.1 67219,67220 2ie2A 222 13.12 2hqkA 219 13.32 2r7dA 469 14.56 1ktbA 405 14.97 b.71.1.1,c.1.8.1 72960,72961 1d3bB 91 17.47 b.38.1.1 24804 1wsrA 375 17.97 2ogrA 229 19.22 1pmhX 185 19.41 b.18.1.18 104193 1o9wA 177 20.06 b.2.3.5 86713 2f9hA 129 20.26 b.161.1.1 133162 2e7dA 131 20.46 1ca1 370 20.66 2ol5A 202 21.66 1rowA 109 21.76 b.1.11.2 97676 1a1x 108 22.22 1gctA 245 22.28 b.47.1.2 26021 2h3jA 75 22.44 1mbmA 198 22.82 b.47.1.3 78916 1qhoA 686 23.24 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21844,22513,27751,28738 1n9pA 207 23.86 b.1.18.16 80343 2ex4A 241 23.88 c.66.1.42 132516 2bibA 547 24.33 b.109.1.1,d.157.1.8 128581,128582 1xedA 117 25.96 b.1.1.1 115229 1gteA 1025 27.33 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 3vubA 101 27.86 b.34.6.1 24613 1x4rA 99 28.43 1g6gA 127 29.21 b.26.1.2 23916 1f60A 458 30.37 b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 2icrA 237 31.41 1h641 75 31.47 1ca1A 370 32.52 a.124.1.1,b.12.1.3 19340,23648 2he4A 90 32.92 2j8gA 339 33.31 1r8eA 278 33.69 a.6.1.3,d.60.1.1 104843,104844 1q6hA 224 35.17 d.26.1.1 95975 1g8aA 227 35.77 c.66.1.3 90506 1my7A 114 36.93 b.1.18.1 79675 2v05A 311 37.13 2furA 209 37.15 b.45.1.1 134185 2hpwA 233 37.92 1o7dD 282 38.42 1avgI 142 39.99 b.60.1.3 27229 2nqwA 93 40.25 2o6pA 161 40.40 1q6uA 245 40.64 d.26.1.1 95998 1pj5A 830 40.83 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 1g9oA 91 42.27 b.36.1.1 60400 1kzlA 208 42.42 b.43.4.3,b.43.4.3 77635,77636 2c78A 405 42.95 b.43.3.1,b.44.1.1,c.37.1.8 130037,130038,130039 1ff4A 65 43.17 g.7.1.1 83251 1a1xA 108 43.25 b.63.1.1 27514 3cc1A 433 43.31 1widA 130 44.04 b.142.1.2 114667 3blcA 330 44.52 2p13A 90 45.49 3vub 101 45.53 1d2eA 397 47.34 b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 2dddA 225 48.17 2dd7A 216 49.18 2z79A 185 49.32 3cnwA 148 50.73 2gcxA 75 51.51 1qavA 90 51.71 b.36.1.1 24777 1mgqA 83 53.26 b.38.1.1 79099 2qyaA 124 53.44 1ssxA 198 53.49 b.47.1.1 98978 2vw2A 697 55.46 1zk5A 176 55.47 1zgoA 223 55.98 3be3A 91 56.53 2fvgA 340 56.77 b.49.3.1,c.56.5.4 134201,134202 2f5yA 91 56.89 b.36.1.1 133015 3cwiA 78 57.36 2dcyA 185 57.45 b.29.1.11 131388 3c8cA 240 57.45 2ol1A 147 58.81 1cd0A 111 59.12 b.1.1.1 20559 2vadA 223 59.15 2oq0A 206 60.55 2gduA 504 61.09 b.71.1.1,c.1.8.1 135032,135033 1jnyA 435 61.83 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1dunA 134 62.02 b.85.4.1 28371 1wzlA 585 65.08 b.1.18.2,b.71.1.1,c.1.8.1 121513,121514,121515 2al3A 90 66.49 d.15.1.2 126957 1flmA 122 67.73 b.45.1.1 25747 2c9jA 223 67.78 2h5oA 234 67.85 2nqrA 411 70.57 b.85.6.1,b.103.1.1,c.57.1.2 138490,138491,138492 3rp2A 224 72.58 b.47.1.2 26298 2covD 104 73.65 1uadC 99 73.67 b.1.18.18 88379 2aaaA 484 73.80 b.71.1.1,c.1.8.1 27777,28764 2bh8A 101 75.38 1amuA 563 76.09 e.23.1.1 43351 3caxA 369 76.11 2bs9A 503 76.49 b.71.1.2,c.1.8.3 129062,129063 1ppjB 439 77.27 d.185.1.1,d.185.1.1 104254,104255 3choA 610 77.33 1xezA 721 77.88 1dkgA 197 78.04 b.73.1.1,h.1.9.1 27812,45626 1p5vA 235 78.22 b.1.11.1,b.7.2.1 87812,87813 1xnkA 196 78.79 b.29.1.11 122195 1b9mA 265 79.27 a.4.5.8,b.40.6.2,b.40.6.2 16118,58938,58939 1th7A 81 79.38 b.38.1.1 119264 1uebA 184 80.25 b.34.5.2,b.40.4.5,b.40.4.5 107782,107783,107784 1uuqA 440 80.37 c.1.8.3 100015 1yvcA 70 82.05 b.40.4.12 124094 1f7dA 136 82.13 b.85.4.1 28353 1y0gA 191 82.16 b.61.6.1 116299 2ey4C 82 82.50 b.43.3.5 132582 1uasA 362 83.19 b.71.1.1,c.1.8.1 88388,88389 7taa 478 83.39 1m1sA 116 83.94 b.1.11.2 84747 2fwkA 121 84.10 b.38.1.1 134245 1lml 478 85.14 1ed7A 45 86.50 b.72.2.1 27809 2v90A 96 88.05