# List of top-scoring protein chains for TR462.t04-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1imbA	277	20.21	e.7.1.1	42957
2hhmA	276	20.22	e.7.1.1	42955
1x53A	145	27.24	d.129.3.5	121703
2ivnA	330	29.89		
1lfcA	25	37.55	j.3.1.5	46074
2ok0L	219	39.29		
1x4zA	121	39.69	b.1.2.1	121701
1ia5A	339	42.62	b.80.1.3	62111
1enoA	312	42.73	c.2.1.2	29905
2ab0A	205	43.14	c.23.16.2	126501
1xb3A	128	56.14	b.6.1.1	115060
2ia2A	265	57.54		
2c4jA	218	62.91	a.45.1.1,c.47.1.5	129816,129817
1xw5A	217	63.05	a.45.1.1,c.47.1.5	116099,116100
1hnaA	217	63.06	a.45.1.1,c.47.1.5	17604,32898
1verA	111	65.74	b.1.1.1	108550
1pmhX	185	76.78	b.18.1.18	104193
2pomA	372	84.00		
2j4oA	401	86.98		
1wt5C	122	87.46