# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ijqA	316	3.644	b.68.5.1,g.3.11.1	62506,62507
1npeA	267	7.332	b.68.5.1	92032
1pmjX	185	11.43	b.18.1.18	104194
1pmhX	185	11.46	b.18.1.18	104193
1bymA	97	14.62	b.34.1.2	24458
2qq9A	226	16.24		
1ca1	370	16.57		
3hhrB	203	17.54	b.1.2.1,b.1.2.1	22005,22006
2g8sA	353	18.48		
2qpwA	149	24.83		
2ciaA	102	25.96		
1khoA	370	27.70	a.124.1.1,b.12.1.3	72489,72490
1xsoA	150	27.95	b.1.8.1	22273
1cqkA	101	29.92	b.1.1.2	21547
2i2cA	272	30.18		
1lfcA	25	30.46	j.3.1.5	46074
2d4qA	257	33.13		
1zxq	192	34.57		
1rcf	169	34.81		
1cd9B	215	34.92	b.1.2.1,b.1.2.1	22041,22042
1oh4A	179	35.75	b.18.1.18	92978
1dt9A	437	37.76	c.55.4.2,d.79.3.2,d.91.1.1	33738,39815,40257
2shpA	525	38.20	c.45.1.2,d.93.1.1,d.93.1.1	32683,40533,40534
1d9cA	121	39.99	a.26.1.3	16901
1bhpA	45	42.38	g.13.1.1	44626
1q2bA	434	43.05	b.29.1.10	95624
1chkA	238	44.13	d.2.1.7	36999
1v04A	355	45.29	b.68.6.2	100240
2azaA	129	45.90	b.6.1.1	22901
1musA	477	46.61	c.55.3.4	79494
2avxA	171	47.97		
2qi2A	347	48.29		
2vgnA	386	49.96		
2hesX	330	53.50		
1xnkA	196	54.16	b.29.1.11	122195
1egnA	434	57.22	b.29.1.10	59411
1gm6A	175	57.98	b.60.1.1	70272
1xb3A	128	58.19	b.6.1.1	115060
2v3iA	434	58.72		
1mjc	69	59.08		
2hu5A	582	59.64	b.69.7.2,c.69.1.33	136763,136764
1cuoA	129	60.99	b.6.1.1	23015
2an1A	292	61.28		
2ic2A	115	64.10	b.1.2.1	137233
1jzgA	128	64.96	b.6.1.1	67855
2z2nA	299	65.44		
1mroB	442	65.64	a.89.1.1,d.58.31.2	18531,39449
1kopA	223	67.28	b.74.1.1	27966
2uxtA	451	68.49		
2nlvA	112	68.50	d.326.1.1	138362
1r17A	343	68.86	b.2.3.4,b.2.3.4	96796,96797
1icfI	65	71.00	g.28.1.1	44958
2d4eA	515	71.91		
1u0tA	307	72.53	e.52.1.1	107567
1v10A	521	77.69	b.6.1.3,b.6.1.3,b.6.1.3	108224,108225,108226
1agtA	38	80.17	g.3.7.2	44156
1xedA	117	81.21	b.1.1.1	115229
2yyoA	171	82.73		
2dg1A	333	83.11	b.68.6.1	131493
2v31A	112	84.40		
1e6yB	433	84.61	a.89.1.1,d.58.31.2	18535,39453
2b9kA	47	85.71		
1ynaA	194	86.17	b.29.1.11	24335
1hbnB	442	87.91	a.89.1.1,d.58.31.2	60900,60901
1e1aA	314	88.83	b.68.6.1	59155
1oe0A	230	88.89	c.37.1.1	92788