# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1npeA 267 3.426 b.68.5.1 92032 2qpwA 149 4.492 1ijqA 316 5.084 b.68.5.1,g.3.11.1 62506,62507 2qq9A 226 8.247 1cqkA 101 8.808 b.1.1.2 21547 1pmjX 185 11.04 b.18.1.18 104194 1pmhX 185 11.43 b.18.1.18 104193 1lfcA 25 16.63 j.3.1.5 46074 1rcf 169 17.62 1v10A 521 19.73 b.6.1.3,b.6.1.3,b.6.1.3 108224,108225,108226 1kopA 223 19.91 b.74.1.1 27966 1xsoA 150 20.14 b.1.8.1 22273 1zxq 192 20.70 2ddzA 190 21.44 2oq0A 206 22.23 2jyeA 72 23.82 1dt9A 437 24.65 c.55.4.2,d.79.3.2,d.91.1.1 33738,39815,40257 1hbnB 442 25.58 a.89.1.1,d.58.31.2 60900,60901 1bymA 97 26.06 b.34.1.2 24458 1i8fA 81 27.34 b.38.1.1 61959 2c81A 418 29.77 1e6yB 433 31.33 a.89.1.1,d.58.31.2 18535,39453 1gm6A 175 31.59 b.60.1.1 70272 2z2nA 299 32.40 1mroB 442 33.41 a.89.1.1,d.58.31.2 18531,39449 2i2cA 272 33.84 1fyhB 229 34.12 b.1.2.1,b.1.2.1 22055,22056 1yezA 68 34.99 b.40.4.12 123026 2azaA 129 35.40 b.6.1.1 22901 2jhnA 295 35.64 1ca1 370 35.76 1q2bA 434 36.94 b.29.1.10 95624 1egnA 434 37.29 b.29.1.10 59411 2v3iA 434 39.05 1h6vA 499 39.16 c.3.1.5,c.3.1.5,d.87.1.1 60693,60694,60695 3hhrB 203 39.71 b.1.2.1,b.1.2.1 22005,22006 1yobA 179 40.34 c.23.5.1 123776 2an1A 292 40.50 8fabA 212 40.86 b.1.1.1,b.1.1.2 19772,20882 1hbnA 549 41.11 a.89.1.1,d.58.31.2 60898,60899 2r2oA 138 42.04 1v04A 355 42.19 b.68.6.2 100240 1mjc 69 42.42 1dl5A 317 42.86 c.66.1.7,d.197.1.1 64720,64721 1khoA 370 44.34 a.124.1.1,b.12.1.3 72489,72490 2ic2A 115 44.37 b.1.2.1 137233 2dbjA 124 45.14 2vd8A 391 46.04 1q7fA 286 47.01 b.68.9.1 96036 2b9kA 47 47.39 1ukfA 188 48.75 d.3.1.10 99488 1jzgA 128 49.77 b.6.1.1 67855 3sil 379 51.74 1icfI 65 51.77 g.28.1.1 44958 2fmmA 74 55.71 b.34.13.2 133782 1y7wA 291 57.11 2hzqA 174 60.21 1wc2A 181 60.33 2ojhA 297 60.96 1y51A 88 61.99 1a3wA 500 63.06 b.58.1.1,c.1.12.1,c.49.1.1 27060,29288,33142 2d4qA 257 64.07 2d4eA 515 64.13 1gpiA 431 67.76 b.29.1.10 65450 1ogdA 131 67.95 c.133.1.1 92893 3co8A 380 68.53 1hfuA 503 68.58 b.6.1.3,b.6.1.3,b.6.1.3 65827,65828,65829 2j8gA 339 69.92 1ag9A 175 70.06 c.23.5.1 31178 1v5tA 90 71.11 d.15.1.1 108385 1agtA 38 72.64 g.3.7.2 44156 1u0tA 307 73.58 e.52.1.1 107567 2o1rA 81 73.85 1fdrA 248 73.89 b.43.4.2,c.25.1.1 25653,31543 1e1aA 314 74.74 b.68.6.1 59155 2coeA 120 74.79 1xnkA 196 75.58 b.29.1.11 122195 2i5eA 211 76.63 1pjxA 314 77.12 b.68.6.1 104167 2yv8A 164 78.12 2z0xA 158 78.49 2shpA 525 78.86 c.45.1.2,d.93.1.1,d.93.1.1 32683,40533,40534 2ciaA 102 78.86 1f8eA 388 80.64 b.68.1.1 59694 2dunA 133 81.00 1dp4A 435 81.43 c.93.1.1 35710 1uuqA 440 81.99 c.1.8.3 100015 1eerB 227 82.76 b.1.2.1,b.1.2.1 22011,22012 1qw1A 121 84.35 2bvaA 292 86.15 2cx5A 158 87.26 1rl2A 137 87.47 b.34.5.3,b.40.4.5 24610,25342 1oh4A 179 87.79 b.18.1.18 92978 2hfxA 260 87.95 1xsqA 168 88.72 b.82.1.14 115999 2nv4A 147 88.95 1xb3A 128 89.19 b.6.1.1 115060