# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ijqA	316	4.038	b.68.5.1,g.3.11.1	62506,62507
2qq9A	226	9.148		
1npeA	267	9.928	b.68.5.1	92032
1rcf	169	14.60		
1bhpA	45	18.06	g.13.1.1	44626
1dt9A	437	21.66	c.55.4.2,d.79.3.2,d.91.1.1	33738,39815,40257
2c81A	418	25.60		
1ca1	370	27.38		
2qpwA	149	27.83		
1lfcA	25	29.47	j.3.1.5	46074
1oh4A	179	31.35	b.18.1.18	92978
3hhrB	203	32.40	b.1.2.1,b.1.2.1	22005,22006
1agtA	38	33.73	g.3.7.2	44156
1v04A	355	34.01	b.68.6.2	100240
1cd9B	215	35.63	b.1.2.1,b.1.2.1	22041,22042
2avxA	171	36.03		
1khoA	370	36.87	a.124.1.1,b.12.1.3	72489,72490
1cqkA	101	37.07	b.1.1.2	21547
2z2nA	299	38.07		
1pmjX	185	38.72	b.18.1.18	104194
1yobA	179	38.91	c.23.5.1	123776
1bymA	97	39.71	b.34.1.2	24458
1pmhX	185	39.96	b.18.1.18	104193
1d9cA	121	41.45	a.26.1.3	16901
1bhp	45	42.16		
2qi2A	347	44.75		
2g8sA	353	45.25		
2i2cA	272	45.80		
1v10A	521	46.49	b.6.1.3,b.6.1.3,b.6.1.3	108224,108225,108226
2ic2A	115	46.66	b.1.2.1	137233
1dmgA	225	48.94	c.22.1.1	31036
1q0uA	219	49.30	c.37.1.19	95512
1musA	477	50.39	c.55.3.4	79494
1t6nA	220	51.41	c.37.1.19	106576
2vgnA	386	54.02		
1oe0A	230	56.38	c.37.1.1	92788
1xsoA	150	58.19	b.1.8.1	22273
1bhuA	102	59.15	b.11.1.3	23631
1ag9A	175	60.57	c.23.5.1	31178
2shpA	525	60.87	c.45.1.2,d.93.1.1,d.93.1.1	32683,40533,40534
1xnkA	196	64.38	b.29.1.11	122195
2uv0E	175	64.48		
1mijA	152	64.84	a.4.1.1	79150
2nytA	190	65.15		
1zxq	192	65.25		
3b8dA	363	65.37		
1kopA	223	66.12	b.74.1.1	27966
1y8qA	346	68.15		
2bvaA	292	69.88		
1aol	228	70.89		
3berA	249	71.09		
2d4eA	515	73.57		
2ciaA	102	74.34		
1icfI	65	74.75	g.28.1.1	44958
1e1aA	314	82.44	b.68.6.1	59155
2pl3A	236	83.33		
1mroB	442	84.32	a.89.1.1,d.58.31.2	18531,39449
2azaA	129	85.40	b.6.1.1	22901
1hbnB	442	86.46	a.89.1.1,d.58.31.2	60900,60901
1y8qB	640	86.53