# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qpwA	149	22.65		
3hhrB	203	25.97	b.1.2.1,b.1.2.1	22005,22006
1bymA	97	27.88	b.34.1.2	24458
1q0uA	219	29.59	c.37.1.19	95512
1t6nA	220	34.20	c.37.1.19	106576
1rcf	169	36.06		
1hbnB	442	36.26	a.89.1.1,d.58.31.2	60900,60901
1cd9B	215	36.70	b.1.2.1,b.1.2.1	22041,22042
1qw1A	121	37.11		
2avxA	171	37.55		
1ijqA	316	38.02	b.68.5.1,g.3.11.1	62506,62507
1nktA	922	39.72	a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19	85830,85831,85832,85833
2qq9A	226	39.79		
1mroB	442	40.85	a.89.1.1,d.58.31.2	18531,39449
1e6yB	433	41.23	a.89.1.1,d.58.31.2	18535,39453
1bhuA	102	50.24	b.11.1.3	23631
1agtA	38	54.20	g.3.7.2	44156
1bhpA	45	61.67	g.13.1.1	44626
1cqkA	101	63.99	b.1.1.2	21547
2pl3A	236	64.84		
1eerB	227	64.91	b.1.2.1,b.1.2.1	22011,22012
2azaA	129	66.82	b.6.1.1	22901
1yezA	68	71.13	b.40.4.12	123026
2hazA	105	72.94	b.1.2.1	136303
1xb3A	128	73.39	b.6.1.1	115060
2jo7A	224	74.72		
1xn5A	146	74.76	d.129.3.5	115574
2gxqA	207	78.40		
3pvaA	335	79.44	d.153.1.3	41854
2fmmA	74	80.15	b.34.13.2	133782
1b34B	118	81.56	b.38.1.1	24797
1d9cA	121	81.61	a.26.1.3	16901
1yobA	179	85.06	c.23.5.1	123776
2r2oA	138	86.33		
2qi2A	347	86.35		
2ciaA	102	86.48		
2f9hA	129	86.59	b.161.1.1	133162