# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ijqA	316	3.438	b.68.5.1,g.3.11.1	62506,62507
1npeA	267	9.281	b.68.5.1	92032
1rcf	169	10.16		
2qq9A	226	14.61		
1bymA	97	23.40	b.34.1.2	24458
1lfcA	25	23.96	j.3.1.5	46074
1yobA	179	25.05	c.23.5.1	123776
3hhrB	203	25.42	b.1.2.1,b.1.2.1	22005,22006
1cd9B	215	26.04	b.1.2.1,b.1.2.1	22041,22042
1bhpA	45	26.12	g.13.1.1	44626
2qpwA	149	30.02		
2ic2A	115	31.03	b.1.2.1	137233
1ca1	370	33.76		
1xsoA	150	34.17	b.1.8.1	22273
1ag9A	175	37.44	c.23.5.1	31178
1pmhX	185	38.53	b.18.1.18	104193
1cqkA	101	38.54	b.1.1.2	21547
1pmjX	185	38.75	b.18.1.18	104194
2avxA	171	39.46		
1oh4A	179	39.52	b.18.1.18	92978
1bhuA	102	40.56	b.11.1.3	23631
1d9cA	121	44.01	a.26.1.3	16901
2i2cA	272	44.45		
1v04A	355	45.13	b.68.6.2	100240
1dt9A	437	45.48	c.55.4.2,d.79.3.2,d.91.1.1	33738,39815,40257
2c81A	418	45.51		
2z2nA	299	47.03		
1v10A	521	48.60	b.6.1.3,b.6.1.3,b.6.1.3	108224,108225,108226
1agtA	38	54.64	g.3.7.2	44156
1musA	477	56.00	c.55.3.4	79494
1zxq	192	56.07		
2d4eA	515	56.73		
1khoA	370	57.20	a.124.1.1,b.12.1.3	72489,72490
1bhp	45	61.05		
2shpA	525	62.15	c.45.1.2,d.93.1.1,d.93.1.1	32683,40533,40534
1kopA	223	62.91	b.74.1.1	27966
2d4qA	257	63.05		
1oe0A	230	66.95	c.37.1.1	92788
2ciaA	102	69.02		
1xnkA	196	69.65	b.29.1.11	122195
2qi2A	347	72.17		
1icfI	65	74.73	g.28.1.1	44958
1hbnB	442	74.91	a.89.1.1,d.58.31.2	60900,60901
1dmgA	225	75.49	c.22.1.1	31036
1y8qA	346	77.25		
2bvaA	292	79.37		
1fyhB	229	80.33	b.1.2.1,b.1.2.1	22055,22056
2nytA	190	81.04		
1mroB	442	83.43	a.89.1.1,d.58.31.2	18531,39449
1chkA	238	84.12	d.2.1.7	36999
1e1aA	314	86.46	b.68.6.1	59155
2hu5A	582	88.32	b.69.7.2,c.69.1.33	136763,136764