# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ijqA	316	7.251	b.68.5.1,g.3.11.1	62506,62507
2qq9A	226	10.32		
1rcf	169	12.59		
1npeA	267	16.78	b.68.5.1	92032
1cqkA	101	19.71	b.1.1.2	21547
1bymA	97	28.15	b.34.1.2	24458
1bhpA	45	29.34	g.13.1.1	44626
1lfcA	25	29.61	j.3.1.5	46074
2qpwA	149	29.86		
1pmjX	185	30.44	b.18.1.18	104194
2avxA	171	31.12		
1yobA	179	31.46	c.23.5.1	123776
1xsoA	150	31.68	b.1.8.1	22273
1pmhX	185	32.09	b.18.1.18	104193
1d9cA	121	36.27	a.26.1.3	16901
1hbnB	442	42.02	a.89.1.1,d.58.31.2	60900,60901
3hhrB	203	42.10	b.1.2.1,b.1.2.1	22005,22006
2c81A	418	42.78		
1y8qA	346	45.49		
1y8qB	640	45.77		
1ag9A	175	46.81	c.23.5.1	31178
1oh4A	179	48.81	b.18.1.18	92978
1mroB	442	50.89	a.89.1.1,d.58.31.2	18531,39449
1agtA	38	51.54	g.3.7.2	44156
1zxq	192	54.85		
2bvaA	292	58.62		
1bhuA	102	58.78	b.11.1.3	23631
1v04A	355	59.85	b.68.6.2	100240
1kopA	223	61.77	b.74.1.1	27966
1oe0A	230	61.81	c.37.1.1	92788
1an8	208	63.79		
2z2nA	299	63.97		
2nytA	190	65.82		
2ic2A	115	67.50	b.1.2.1	137233
1mjc	69	69.03		
1icfI	65	69.14	g.28.1.1	44958
1bhp	45	69.29		
1dt9A	437	69.36	c.55.4.2,d.79.3.2,d.91.1.1	33738,39815,40257
1e6yB	433	70.45	a.89.1.1,d.58.31.2	18535,39453
2i2cA	272	75.51		
2uxtA	451	76.25		
1ca1	370	76.48		
1cd9B	215	76.92	b.1.2.1,b.1.2.1	22041,22042
8fabA	212	78.05	b.1.1.1,b.1.1.2	19772,20882
2uv0E	175	78.47		
2hzqA	174	78.52		
2shpA	525	81.14	c.45.1.2,d.93.1.1,d.93.1.1	32683,40533,40534
1fyhB	229	81.77	b.1.2.1,b.1.2.1	22055,22056
1musA	477	84.28	c.55.3.4	79494
2d4eA	515	88.05		
2pviA	157	89.65	c.52.1.6	33302