This file specifies which residues will be varied Column 2: Chain Column 4-7: sequential residue number Column 9-12: pdb residue number Column 14-18: id (described below) Column 21-40: amino acids to be used NATAA => use native amino acid ALLAA => all amino acids NATRO => native amino acid and rotamer PIKAA => select inividual amino acids POLAR => polar amino acids APOLA => apolar amino acids The following demo lines are in the proper format A 1 3 NATAA A 2 4 ALLAA A 3 6 NATRO A 4 7 NATAA B 5 1 PIKAA DFLM B 6 2 PIKAA HIL B 7 3 POLAR ------------------------------------------------- start A 1 77 NATAA E A 2 78 NATAA L A 3 79 NATRO P A 4 80 NATAA L A 5 81 NATAA I A 6 82 NATAA L A 7 83 NATAA A A 8 84 NATAA D A 9 85 NATAA D A 10 86 NATAA G A 11 87 NATAA T A 12 88 NATAA Y A 13 89 NATAA E A 14 90 NATAA I A 15 91 NATAA T A 16 92 NATAA K A 17 93 NATAA L A 18 94 NATAA N A 19 95 NATAA G A 20 96 NATAA G A 21 97 NATAA R A 22 98 NATAA R A 23 99 NATAA F A 24 100 NATAA L A 25 101 NATAA F A 26 102 NATAA R A 27 103 NATAA M A 28 104 NATAA K A 29 105 NATAA N A 30 106 NATAA L A 31 107 NATAA G A 32 108 NATAA I A 33 109 NATAA E A 34 110 NATAA S A 35 111 NATAA G A 36 112 NATAA K A 37 113 NATAA K A 38 114 NATAA I A 39 115 NATAA Q A 40 116 NATAA V A 41 117 NATAA S A 42 118 NATAA G A 43 119 NATAA R A 44 120 NATAA R A 45 121 NATAA Y A 46 122 NATAA Y A 47 123 NATAA I A 48 124 NATAA E A 49 125 NATAA G A 50 126 NATAA R A 51 127 NATAA E A 52 128 NATAA I A 53 129 NATAA D A 54 130 NATAA L A 55 131 NATAA G A 56 132 NATAA Y A 57 133 NATAA G A 58 134 NATAA E A 59 135 NATAA A A 60 136 NATAA T A 61 137 NATAA K A 62 138 NATAA I A 63 139 NATAA W A 64 140 NATAA V A 65 141 NATAA R A 66 142 NATAA R A 67 143 NATAA V