Best Alignments for TR461

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2nx8A	1.0105e-25	2nx8A/TR461-2nx8A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2b3jA	1.3767e-24	2b3jA/TR461-2b3jA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.2
1z3aA	4.8325e-24	1z3aA/TR461-1z3aA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.2
1wwrA	2.0958e-23	1wwrA/TR461-1wwrA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.2
1wkqA	3.0445e-23	1wkqA/TR461-1wkqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.2
2g84A	1.3012e-22	2g84A/TR461-2g84A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.2
2a8nA	4.0385e-22	2a8nA/TR461-2a8nA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.2
1p6oA	2.7298e-21	1p6oA/TR461-1p6oA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.2
2b3zA	8.3453e-21	2b3zA/TR461-2b3zA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.71.1.2 c.97.1.2
2hxvA	1.1815e-20	2hxvA/TR461-2hxvA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.71.1.2 c.97.1.2
1vq2A	1.8196e-20	1vq2A/TR461-1vq2A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.2
2hvwA	6.0771e-20	2hvwA/TR461-2hvwA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1ctt	7.0033e-12	1ctt/TR461-1ctt-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1cttA	1.0069e-11	1cttA/TR461-1cttA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.1 c.97.1.1
1tiyA	4.5338e-11	1tiyA/TR461-1tiyA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.2
3b8fA	2.8120e-06	3b8fA/TR461-3b8fA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2fr5A	2.6228e-05	2fr5A/TR461-2fr5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.1
1uwzA	1.3181e-04	1uwzA/TR461-1uwzA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.1
1r5tA	1.8633e-04	1r5tA/TR461-1r5tA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.1
1uaqA	1.3338e-03	1uaqA/TR461-1uaqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.2

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001