# List of top-scoring protein chains for TR461.t2k-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1z3aA	168	1.01e-13	c.97.1.2	124396
2b3jA	159	6.13e-13	c.97.1.2	127787
2nx8A	179	2.68e-12		
1wwrA	171	2.80e-12	c.97.1.2	121366
2a8nA	144	3.66e-12	c.97.1.2	126408
2o7pA	380	5.51e-11		
2g6vA	402	5.82e-11		
2b3zA	373	1.76e-10	c.71.1.2,c.97.1.2	127807,127808
1wkqA	164	3.13e-10	c.97.1.2	109393
1tiyA	164	3.31e-10	c.97.1.2	107012
2hxvA	360	6.12e-10	c.71.1.2,c.97.1.2	136859,136860
1ysbA	161	6.86e-10	c.97.1.2	123966
2o3kA	161	7.08e-10		
1ysdA	161	7.19e-10	c.97.1.2	123968
1uaqA	158	7.33e-10	c.97.1.2	88386
1p6oA	161	7.43e-10	c.97.1.2	94185
2hvwA	184	5.96e-07		
1vq2A	193	3.26e-06	c.97.1.2	114004
2g84A	197	4.26e-06	c.97.1.2	134766
1ux1A	136	0.6769	c.97.1.1	108085
2nytA	190	0.7291		
1ux0A	136	5.758	c.97.1.1	108083
1jtkA	136	7.109	c.97.1.1	71862
1uwzA	136	7.956	c.97.1.1	108081
1mq0A	140	9.453	c.97.1.1	91389
2e54A	385	24.11		
2ordA	397	24.28		
2d30A	141	25.67	c.97.1.1	131190
2jywA	195	32.65		
3c96A	410	62.32		
2rgjA	402	62.62		
1zvmA	256	65.75		
1yh3A	256	65.97		
2aukA	190	68.03		
2o3tA	262	68.98		
2o3rA	262	70.02		
2i66A	262	70.48		
2o3sA	262	70.71		
2hctA	262	70.78		
2ef1A	256	76.64		
3gpdG	334	76.80	c.2.1.3,d.81.1.1	30029,39944
1qoiA	177	82.23	b.62.1.1	27490
1i2kA	269	83.88	e.17.1.1	90661
2i7kA	117	87.42