# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2nx8A 179 8.26e-23 2b3jA 159 1.41e-22 c.97.1.2 127787 1z3aA 168 3.36e-22 c.97.1.2 124396 2a8nA 144 1.29e-21 c.97.1.2 126408 1wwrA 171 8.34e-21 c.97.1.2 121366 1wkqA 164 3.60e-20 c.97.1.2 109393 2g84A 197 4.31e-20 c.97.1.2 134766 1tiyA 164 4.84e-20 c.97.1.2 107012 1p6oA 161 5.40e-20 c.97.1.2 94185 1uaqA 158 6.17e-20 c.97.1.2 88386 2hvwA 184 2.94e-19 1vq2A 193 2.00e-16 c.97.1.2 114004 2b3zA 373 2.04e-16 c.71.1.2,c.97.1.2 127807,127808 2hxvA 360 2.90e-16 c.71.1.2,c.97.1.2 136859,136860 2fr5A 146 0.01554 c.97.1.1 133965 1r5tA 142 0.1896 c.97.1.1 104812 1cttA 294 0.2821 c.97.1.1,c.97.1.1 36022,36023 1ctt 294 0.3200 1jtkA 136 0.4277 c.97.1.1 71862 1uwzA 136 1.058 c.97.1.1 108081 2nytA 190 1.094 1j53A 186 1.491 c.55.3.5 77076 1wn5A 130 4.494 c.97.1.1 121082 1j3wA 163 4.544 d.110.7.1 90833 2qkmB 266 5.255 1yqsA 349 5.302 e.3.1.1 123899 1fr1A 361 7.407 e.3.1.1 42734 1zy7A 403 7.729 1fsyA 358 8.926 e.3.1.1 60016 1onhA 364 10.67 e.3.1.1 93357 2ffyA 358 13.08 e.3.1.1 133394 1j54A 186 13.44 c.55.3.5 77077 2drwA 363 13.75 e.3.1.1 131674 1ci9A 392 14.51 e.3.1.1 64767 1rgyA 360 14.86 e.3.1.1 97456 1ei5A 520 15.42 b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 2guiA 194 16.32 c.55.3.5 135737 2e2oA 299 17.65 2fp4B 395 17.84 c.23.4.1,d.142.1.4 133897,133898 1rgzA 363 17.91 e.3.1.1 97457 2a6tA 271 18.70 a.242.1.1,d.113.1.7 126309,126310 1eudB 396 19.17 c.23.4.1,d.142.1.4 31150,41571 1l0gA 358 19.32 e.3.1.1 73400 1zkjA 359 20.10 1rh9A 373 20.66 c.1.8.3 118773 2i8tA 167 21.25 1w0hA 204 21.79 c.55.3.5 114064 1obfO 335 22.10 c.2.1.3,d.81.1.1 86768,86769 1zbfA 142 23.24 c.55.3.1 124850 1v8yA 170 23.95 d.113.1.1 113581 2idrA 177 24.98 1g8mA 593 26.38 c.24.1.3,c.97.1.4 60371,60372 2cjgA 449 26.80 2nugA 221 27.97 2p1jA 186 28.80 3c9hA 355 34.43 1air 353 34.99 2b0vA 153 35.63 d.113.1.1 127650 1udcA 338 36.04 c.2.1.2 29785 2o1cA 150 36.67 1f3yA 165 36.81 d.113.1.1 59635 3b8fA 142 37.52 1k3tA 359 40.34 c.2.1.3,d.81.1.1 72022,72023 2ae6A 166 45.63 d.108.1.1 126600 1bwsA 321 47.28 c.2.1.2 29812 1rkd 309 52.46 1e7rA 321 52.85 c.2.1.2 29808 1zczA 464 53.45 c.24.1.3,c.97.1.4 124923,124924 2fckA 181 53.60 d.108.1.1 133272 2aukA 190 61.59 2jgbA 195 62.27 2uubK 129 62.91 c.55.4.1 139942 1eu1A 780 64.70 b.52.2.2,c.81.1.1 26903,35311 1pwgA 349 65.42 e.3.1.1 104340 1jykA 254 67.04 c.68.1.13 67458 1j7lA 264 70.74 d.144.1.6 62697 2fsrA 195 72.68 d.108.1.1 134036 1b2pA 119 72.77 b.78.1.1 27998 1m9nA 613 74.21 c.24.1.3,c.97.1.4 78870,78871 1gy8A 397 76.22 c.2.1.2 83376 1b77A 228 78.61 d.131.1.2,d.131.1.2 41362,41363 1ktgA 138 79.13 d.113.1.1 72972 1v84A 253 81.55 c.68.1.7 108419 2abqA 306 84.25 c.72.1.1 126528 1v82A 253 85.70 c.68.1.7 108415 2z3hA 130 89.08