# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2nx8A 179 2.52e-22 2b3jA 159 5.47e-22 c.97.1.2 127787 1z3aA 168 1.18e-21 c.97.1.2 124396 2a8nA 144 4.55e-21 c.97.1.2 126408 1wwrA 171 3.09e-20 c.97.1.2 121366 1tiyA 164 1.14e-19 c.97.1.2 107012 1wkqA 164 1.14e-19 c.97.1.2 109393 2g84A 197 1.24e-19 c.97.1.2 134766 1uaqA 158 1.99e-19 c.97.1.2 88386 1p6oA 161 2.42e-19 c.97.1.2 94185 2hvwA 184 9.06e-19 2b3zA 373 3.12e-16 c.71.1.2,c.97.1.2 127807,127808 1vq2A 193 4.08e-16 c.97.1.2 114004 2hxvA 360 4.50e-16 c.71.1.2,c.97.1.2 136859,136860 2fr5A 146 0.06006 c.97.1.1 133965 1cttA 294 0.1905 c.97.1.1,c.97.1.1 36022,36023 1r5tA 142 0.4184 c.97.1.1 104812 2nytA 190 0.5233 1j53A 186 0.5658 c.55.3.5 77076 1ctt 294 0.7693 1uwzA 136 2.128 c.97.1.1 108081 1jtkA 136 2.164 c.97.1.1 71862 2qkmB 266 3.673 1fr1A 361 6.422 e.3.1.1 42734 1rgyA 360 7.554 e.3.1.1 97456 1onhA 364 7.690 e.3.1.1 93357 1wn5A 130 8.145 c.97.1.1 121082 1j54A 186 8.412 c.55.3.5 77077 1fsyA 358 8.781 e.3.1.1 60016 1zy7A 403 8.924 2drwA 363 9.186 e.3.1.1 131674 1yqsA 349 9.187 e.3.1.1 123899 2ffyA 358 10.51 e.3.1.1 133394 1j3wA 163 10.62 d.110.7.1 90833 2guiA 194 11.24 c.55.3.5 135737 2a6tA 271 12.82 a.242.1.1,d.113.1.7 126309,126310 1rgzA 363 13.21 e.3.1.1 97457 1zkjA 359 13.68 1air 353 14.44 1ei5A 520 17.57 b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 1l0gA 358 19.56 e.3.1.1 73400 2p1jA 186 21.17 2i8tA 167 24.60 1eudB 396 25.42 c.23.4.1,d.142.1.4 31150,41571 1ci9A 392 26.53 e.3.1.1 64767 1w0hA 204 26.90 c.55.3.5 114064 3b8fA 142 27.77 1rh9A 373 28.42 c.1.8.3 118773 1v8yA 170 29.64 d.113.1.1 113581 2e2oA 299 30.17 1obfO 335 30.92 c.2.1.3,d.81.1.1 86768,86769 2cjgA 449 32.59 1g8mA 593 32.89 c.24.1.3,c.97.1.4 60371,60372 1zbfA 142 38.06 c.55.3.1 124850 2fp4B 395 40.68 c.23.4.1,d.142.1.4 133897,133898 1zczA 464 41.62 c.24.1.3,c.97.1.4 124923,124924 2b0vA 153 45.96 d.113.1.1 127650 3c9hA 355 47.28 2nugA 221 49.92 2o1cA 150 55.22 1b77A 228 55.51 d.131.1.2,d.131.1.2 41362,41363 2fckA 181 56.67 d.108.1.1 133272 1pwgA 349 56.82 e.3.1.1 104340 2ae6A 166 57.19 d.108.1.1 126600 1rkd 309 59.83 2idrA 177 60.97 1f3yA 165 62.47 d.113.1.1 59635 1k3tA 359 62.99 c.2.1.3,d.81.1.1 72022,72023 1jykA 254 64.67 c.68.1.13 67458 1jr3A 373 67.08 a.80.1.1,c.37.1.20 63245,63246 2eb4A 267 69.56 1udcA 338 73.49 c.2.1.2 29785 1pot 325 73.54 1fxoA 293 77.03 c.68.1.6 34524 1eu1A 780 79.04 b.52.2.2,c.81.1.1 26903,35311 1bwsA 321 87.49 c.2.1.2 29812 1v82A 253 87.74 c.68.1.7 108415 2qkbA 154 88.03