# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2nx8A 179 1.55e-24 2b3jA 159 4.57e-24 c.97.1.2 127787 1z3aA 168 1.04e-23 c.97.1.2 124396 2a8nA 144 3.14e-23 c.97.1.2 126408 1wwrA 171 7.68e-23 c.97.1.2 121366 1wkqA 164 3.36e-22 c.97.1.2 109393 1tiyA 164 5.77e-22 c.97.1.2 107012 2g84A 197 2.18e-21 c.97.1.2 134766 1p6oA 161 4.14e-21 c.97.1.2 94185 1uaqA 158 5.44e-21 c.97.1.2 88386 2hvwA 184 1.52e-20 2b3zA 373 2.48e-18 c.71.1.2,c.97.1.2 127807,127808 1vq2A 193 7.42e-18 c.97.1.2 114004 2hxvA 360 1.04e-17 c.71.1.2,c.97.1.2 136859,136860 2fr5A 146 0.008043 c.97.1.1 133965 1r5tA 142 0.05264 c.97.1.1 104812 1ctt 294 0.1517 1jtkA 136 0.2456 c.97.1.1 71862 2nytA 190 0.2493 1uwzA 136 0.3008 c.97.1.1 108081 3b8fA 142 0.3820 1j53A 186 0.4180 c.55.3.5 77076 1fsyA 358 0.7997 e.3.1.1 60016 1fr1A 361 0.9294 e.3.1.1 42734 1onhA 364 1.157 e.3.1.1 93357 1cttA 294 1.393 c.97.1.1,c.97.1.1 36022,36023 1zkjA 359 1.641 1rgzA 363 1.722 e.3.1.1 97457 2ffyA 358 1.728 e.3.1.1 133394 1wn5A 130 1.782 c.97.1.1 121082 1l0gA 358 1.813 e.3.1.1 73400 1rgyA 360 1.862 e.3.1.1 97456 2a6tA 271 2.875 a.242.1.1,d.113.1.7 126309,126310 1j54A 186 2.994 c.55.3.5 77077 2qkmB 266 3.004 2drwA 363 3.137 e.3.1.1 131674 1yqsA 349 4.532 e.3.1.1 123899 1ex2A 189 4.724 c.51.4.2 33225 2guiA 194 5.346 c.55.3.5 135737 2b0vA 153 5.784 d.113.1.1 127650 1j3wA 163 6.000 d.110.7.1 90833 1ci9A 392 6.146 e.3.1.1 64767 1air 353 6.183 1v8yA 170 7.472 d.113.1.1 113581 1ei5A 520 8.111 b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 2pw9A 268 10.09 2i8tA 167 10.68 2fp4B 395 11.01 c.23.4.1,d.142.1.4 133897,133898 1crwG 333 11.93 c.2.1.3,d.81.1.1 30026,39941 1zczA 464 12.12 c.24.1.3,c.97.1.4 124923,124924 1pbeA 394 12.41 c.3.1.2,d.16.1.2 30338,37869 1g8mA 593 12.77 c.24.1.3,c.97.1.4 60371,60372 1f3yA 165 14.25 d.113.1.1 59635 2pqvA 154 14.57 1pwgA 349 16.87 e.3.1.1 104340 1zy7A 403 17.05 2p1jA 186 17.36 1obfO 335 18.39 c.2.1.3,d.81.1.1 86768,86769 1b77A 228 23.81 d.131.1.2,d.131.1.2 41362,41363 2z3hA 130 24.51 1w2tA 432 24.53 b.29.1.19,b.67.2.3 120607,120608 2ci1A 275 26.70 1rh9A 373 26.98 c.1.8.3 118773 1qo8A 566 28.27 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 1gceA 364 28.35 e.3.1.1 42738 1gd1O 334 28.37 c.2.1.3,d.81.1.1 29962,39877 2nugA 221 28.45 1uypA 432 29.16 b.29.1.19,b.67.2.3 100176,100177 2fckA 181 29.17 d.108.1.1 133272 2eb4A 267 29.54 1pczA 191 30.20 d.129.1.1,d.129.1.1 41292,41293 1eudB 396 32.49 c.23.4.1,d.142.1.4 31150,41571 1rkd 309 32.58 1hrhA 136 34.20 c.55.3.1 33577 1dssG 333 34.68 c.2.1.3,d.81.1.1 30022,39937 1sdeA 347 35.17 e.3.1.1 112073 2oodA 475 35.84 1k3tA 359 36.28 c.2.1.3,d.81.1.1 72022,72023 1zbfA 142 37.06 c.55.3.1 124850 2o1cA 150 40.06 1m9nA 613 41.29 c.24.1.3,c.97.1.4 78870,78871 1s7kA 182 41.52 d.108.1.1 118878 1jtdB 273 42.88 b.69.5.2 67265 2fhpA 187 44.25 c.66.1.46 133495 2uubK 129 45.12 c.55.4.1 139942 1aq0A 306 45.18 c.1.8.3 28842 1hkfA 122 45.40 b.1.1.1 83553 1v84A 253 46.09 c.68.1.7 108419 1j7lA 264 46.11 d.144.1.6 62697 2aukA 190 46.87 2qjtA 352 47.48 1pot 325 47.59 1acfA 125 48.30 d.110.1.1 40882 1f21A 155 50.21 c.55.3.1 33550 1u8fO 335 52.03 c.2.1.3,d.81.1.1 119626,119627 1vk9A 151 52.67 c.97.1.3 108640 2e2oA 299 53.26 2hqyA 305 53.30 1fxoA 293 53.51 c.68.1.6 34524 2abbA 364 55.11 c.1.4.1 126517 2byjA 439 55.52 c.67.1.4 129483 1vicA 262 56.86 c.68.1.13 100756 2qjoA 341 58.90 1w0hA 204 59.08 c.55.3.5 114064 2gnpA 266 59.57 1bcpB 199 59.66 b.40.2.1,d.169.1.2 25120,42429 1ubpC 570 60.62 b.92.1.1,c.1.9.2 28432,29054 1jflA 228 62.04 c.78.2.1,c.78.2.1 71656,71657 3blnA 143 62.41 1jr3A 373 62.60 a.80.1.1,c.37.1.20 63245,63246 1v82A 253 63.11 c.68.1.7 108415 1jykA 254 63.16 c.68.1.13 67458 2cjgA 449 64.40 1ybqB 390 66.33 2affA 120 67.13 b.26.1.2 126678 2r14A 377 67.67 4ubpC 570 67.95 b.92.1.1,c.1.9.2 28431,29053 3c9hA 355 68.38 1nslA 184 69.02 d.108.1.1 86137 1rthA 560 70.81 c.55.3.1,e.8.1.2 33576,43028 1ryaA 160 71.10 d.113.1.5 105122 1vyrA 364 71.66 c.1.4.1 108906 1fyeA 229 72.20 c.23.16.4 31477 1vypX 364 73.06 c.1.4.1 108905 2qytA 317 73.33 1b2pA 119 74.25 b.78.1.1 27998 2eh6A 375 74.84 1d3uA 181 75.81 d.129.1.1,d.129.1.1 41290,41291 1bwsA 321 76.02 c.2.1.2 29812 1ejrC 567 78.04 b.92.1.1,c.1.9.2 28420,29042 1aisA 182 79.23 d.129.1.1,d.129.1.1 41288,41289 1z41A 338 79.61 c.1.4.1 124421 2acfA 182 81.79 c.50.1.2 126547 1eajA 126 81.85 b.1.1.1 59401 1mbmA 198 83.14 b.47.1.3 78916 2uv4A 152 84.30 1a99A 344 84.57 c.94.1.1 35812 2ftwA 521 85.50 b.92.1.3,c.1.9.6 134083,134084 2pofA 227 85.60 2uwxA 494 85.62 e.3.1.1 140002 1v8aA 265 86.65 c.72.1.2 100494 1gkrA 458 87.33 b.92.1.3,c.1.9.6 70251,70252 2hs8A 402 87.67 1udcA 338 88.30 c.2.1.2 29785 1rm4A 337 88.75 c.2.1.3,d.81.1.1 105000,105001