# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2nx8A 179 9.31e-23 2b3jA 159 2.21e-22 c.97.1.2 127787 1z3aA 168 2.81e-22 c.97.1.2 124396 2a8nA 144 1.02e-21 c.97.1.2 126408 1wwrA 171 8.52e-21 c.97.1.2 121366 1wkqA 164 1.60e-20 c.97.1.2 109393 1tiyA 164 2.42e-20 c.97.1.2 107012 2g84A 197 2.64e-20 c.97.1.2 134766 1p6oA 161 5.60e-20 c.97.1.2 94185 1uaqA 158 5.71e-20 c.97.1.2 88386 2hvwA 184 1.45e-19 1vq2A 193 7.49e-17 c.97.1.2 114004 2b3zA 373 1.13e-16 c.71.1.2,c.97.1.2 127807,127808 2hxvA 360 1.87e-16 c.71.1.2,c.97.1.2 136859,136860 2fr5A 146 0.01123 c.97.1.1 133965 1r5tA 142 0.1494 c.97.1.1 104812 1cttA 294 0.4015 c.97.1.1,c.97.1.1 36022,36023 1jtkA 136 0.4379 c.97.1.1 71862 1ctt 294 0.5228 1j53A 186 0.6035 c.55.3.5 77076 2nytA 190 0.8087 1uwzA 136 1.827 c.97.1.1 108081 1wn5A 130 1.926 c.97.1.1 121082 1yqsA 349 2.501 e.3.1.1 123899 2qkmB 266 3.328 1j3wA 163 3.662 d.110.7.1 90833 1fr1A 361 6.039 e.3.1.1 42734 2ffyA 358 6.396 e.3.1.1 133394 1j54A 186 8.918 c.55.3.5 77077 1fsyA 358 8.922 e.3.1.1 60016 1onhA 364 9.795 e.3.1.1 93357 3b8fA 142 9.823 1rgyA 360 10.15 e.3.1.1 97456 2guiA 194 10.29 c.55.3.5 135737 2i8tA 167 10.80 1l0gA 358 11.03 e.3.1.1 73400 1ci9A 392 11.49 e.3.1.1 64767 1rgzA 363 11.76 e.3.1.1 97457 1zbfA 142 13.12 c.55.3.1 124850 2drwA 363 13.26 e.3.1.1 131674 2cjgA 449 15.38 1obfO 335 15.40 c.2.1.3,d.81.1.1 86768,86769 2a6tA 271 17.70 a.242.1.1,d.113.1.7 126309,126310 1v8yA 170 17.88 d.113.1.1 113581 1ei5A 520 18.40 b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 1zkjA 359 21.51 1zy7A 403 22.47 1air 353 24.06 1f21A 155 24.34 c.55.3.1 33550 2e2oA 299 26.92 3c9hA 355 26.94 2nugA 221 28.63 2p1jA 186 29.77 2fp4B 395 29.99 c.23.4.1,d.142.1.4 133897,133898 1pwgA 349 31.92 e.3.1.1 104340 1g8mA 593 33.99 c.24.1.3,c.97.1.4 60371,60372 1eudB 396 35.20 c.23.4.1,d.142.1.4 31150,41571 2z3hA 130 35.87 2riqA 160 36.03 1crwG 333 37.18 c.2.1.3,d.81.1.1 30026,39941 1v84A 253 37.62 c.68.1.7 108419 1rh9A 373 38.33 c.1.8.3 118773 2b0vA 153 38.99 d.113.1.1 127650 1pbeA 394 40.11 c.3.1.2,d.16.1.2 30338,37869 1b77A 228 40.80 d.131.1.2,d.131.1.2 41362,41363 2qkbA 154 42.18 2o1cA 150 42.46 2ae6A 166 44.35 d.108.1.1 126600 1sdeA 347 49.36 e.3.1.1 112073 2z10A 194 50.80 1w0hA 204 51.37 c.55.3.5 114064 1jr3A 373 53.28 a.80.1.1,c.37.1.20 63245,63246 1f3yA 165 55.22 d.113.1.1 59635 1v82A 253 58.75 c.68.1.7 108415 1gd1O 334 59.38 c.2.1.3,d.81.1.1 29962,39877 1gca 309 60.50 2isbA 192 61.23 c.8.9.1 137601 1aisA 182 62.93 d.129.1.1,d.129.1.1 41288,41289 2idrA 177 63.54 1hrhA 136 66.13 c.55.3.1 33577 1d3uA 181 67.52 d.129.1.1,d.129.1.1 41290,41291 1b2pA 119 71.43 b.78.1.1 27998 1j7lA 264 72.79 d.144.1.6 62697 2d0jA 246 74.16 1k3tA 359 74.18 c.2.1.3,d.81.1.1 72022,72023 2fckA 181 75.49 d.108.1.1 133272 1dssG 333 78.30 c.2.1.3,d.81.1.1 30022,39937 1pczA 191 81.88 d.129.1.1,d.129.1.1 41292,41293 1qo8A 566 84.73 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 2a7kA 250 87.57 c.14.1.3 126341 1zc6A 305 88.73 c.55.1.5,c.55.1.5 124888,124889 1kwsA 261 89.20 c.68.1.7 73083