# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2nx8A 179 4.48e-23 2b3jA 159 1.04e-22 c.97.1.2 127787 1z3aA 168 1.38e-22 c.97.1.2 124396 2a8nA 144 5.81e-22 c.97.1.2 126408 1wwrA 171 5.11e-21 c.97.1.2 121366 2g84A 197 1.30e-20 c.97.1.2 134766 1wkqA 164 1.50e-20 c.97.1.2 109393 1tiyA 164 1.60e-20 c.97.1.2 107012 1uaqA 158 3.00e-20 c.97.1.2 88386 1p6oA 161 3.31e-20 c.97.1.2 94185 2hvwA 184 1.15e-19 1vq2A 193 6.00e-17 c.97.1.2 114004 2b3zA 373 7.41e-17 c.71.1.2,c.97.1.2 127807,127808 2hxvA 360 7.96e-17 c.71.1.2,c.97.1.2 136859,136860 2fr5A 146 0.04464 c.97.1.1 133965 1r5tA 142 0.3437 c.97.1.1 104812 1cttA 294 0.3974 c.97.1.1,c.97.1.1 36022,36023 2nytA 190 0.7815 1j53A 186 0.9628 c.55.3.5 77076 1jtkA 136 0.997 c.97.1.1 71862 1ctt 294 1.516 1yqsA 349 2.580 e.3.1.1 123899 1uwzA 136 2.591 c.97.1.1 108081 2qkmB 266 3.781 1wn5A 130 4.890 c.97.1.1 121082 1j3wA 163 5.125 d.110.7.1 90833 1fr1A 361 7.231 e.3.1.1 42734 2ffyA 358 7.671 e.3.1.1 133394 1rgyA 360 7.696 e.3.1.1 97456 1fsyA 358 8.435 e.3.1.1 60016 1zbfA 142 8.710 c.55.3.1 124850 2i8tA 167 10.03 1onhA 364 10.31 e.3.1.1 93357 1obfO 335 11.03 c.2.1.3,d.81.1.1 86768,86769 1j54A 186 11.42 c.55.3.5 77077 2drwA 363 11.72 e.3.1.1 131674 1ci9A 392 11.81 e.3.1.1 64767 1l0gA 358 11.83 e.3.1.1 73400 1rgzA 363 12.21 e.3.1.1 97457 2cjgA 449 12.36 2guiA 194 13.93 c.55.3.5 135737 3c9hA 355 15.14 1zkjA 359 15.47 2a6tA 271 17.04 a.242.1.1,d.113.1.7 126309,126310 1air 353 17.39 1rh9A 373 20.48 c.1.8.3 118773 1ei5A 520 22.29 b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 2nugA 221 25.42 1zy7A 403 26.95 1v8yA 170 28.26 d.113.1.1 113581 2e2oA 299 30.73 1crwG 333 35.19 c.2.1.3,d.81.1.1 30026,39941 2qkbA 154 35.26 2b0vA 153 38.76 d.113.1.1 127650 2o1cA 150 39.96 2riqA 160 41.08 2idrA 177 42.40 1pwgA 349 42.78 e.3.1.1 104340 1v84A 253 43.52 c.68.1.7 108419 1k3tA 359 46.41 c.2.1.3,d.81.1.1 72022,72023 1g8mA 593 47.03 c.24.1.3,c.97.1.4 60371,60372 2p1jA 186 47.19 1jr3A 373 50.77 a.80.1.1,c.37.1.20 63245,63246 1gd1O 334 51.47 c.2.1.3,d.81.1.1 29962,39877 1f3yA 165 51.50 d.113.1.1 59635 1w0hA 204 55.05 c.55.3.5 114064 1gca 309 57.14 2fp4B 395 58.29 c.23.4.1,d.142.1.4 133897,133898 1f21A 155 59.95 c.55.3.1 33550 1dssG 333 60.45 c.2.1.3,d.81.1.1 30022,39937 1eudB 396 61.80 c.23.4.1,d.142.1.4 31150,41571 2fckA 181 61.93 d.108.1.1 133272 2isbA 192 62.98 c.8.9.1 137601 1v82A 253 65.14 c.68.1.7 108415 1qo8A 566 66.91 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 1sdeA 347 67.21 e.3.1.1 112073 1udcA 338 68.22 c.2.1.2 29785 2a7kA 250 69.11 c.14.1.3 126341 1jykA 254 69.30 c.68.1.13 67458 1b77A 228 71.08 d.131.1.2,d.131.1.2 41362,41363 1pbeA 394 75.55 c.3.1.2,d.16.1.2 30338,37869 1aisA 182 77.85 d.129.1.1,d.129.1.1 41288,41289 1j7lA 264 78.02 d.144.1.6 62697 2ae6A 166 78.64 d.108.1.1 126600 1zc6A 305 79.81 c.55.1.5,c.55.1.5 124888,124889 2cw6A 298 81.46 1pot 325 81.63 2z3hA 130 83.68 1rkd 309 84.17 2d0jA 246 87.54 1d3uA 181 88.21 d.129.1.1,d.129.1.1 41290,41291 2abqA 306 88.24 c.72.1.1 126528 2aukA 190 88.97 1eu1A 780 89.07 b.52.2.2,c.81.1.1 26903,35311 2bylA 439 89.09 c.67.1.4 129490