# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2nx8A 179 7.96e-22 2b3jA 159 1.62e-21 c.97.1.2 127787 1z3aA 168 2.18e-21 c.97.1.2 124396 2a8nA 144 9.75e-21 c.97.1.2 126408 1wwrA 171 6.90e-20 c.97.1.2 121366 2g84A 197 1.69e-19 c.97.1.2 134766 1wkqA 164 1.85e-19 c.97.1.2 109393 1tiyA 164 2.38e-19 c.97.1.2 107012 1uaqA 158 3.45e-19 c.97.1.2 88386 1p6oA 161 3.85e-19 c.97.1.2 94185 2hvwA 184 1.05e-18 1vq2A 193 4.48e-16 c.97.1.2 114004 2b3zA 373 5.05e-16 c.71.1.2,c.97.1.2 127807,127808 2hxvA 360 6.99e-16 c.71.1.2,c.97.1.2 136859,136860 2fr5A 146 0.02308 c.97.1.1 133965 1r5tA 142 0.2159 c.97.1.1 104812 1cttA 294 0.3147 c.97.1.1,c.97.1.1 36022,36023 2nytA 190 0.5753 1jtkA 136 0.6202 c.97.1.1 71862 1j53A 186 0.8964 c.55.3.5 77076 1ctt 294 1.189 1uwzA 136 1.275 c.97.1.1 108081 1yqsA 349 3.349 e.3.1.1 123899 2qkmB 266 3.380 1wn5A 130 4.056 c.97.1.1 121082 1j3wA 163 5.616 d.110.7.1 90833 1j54A 186 9.242 c.55.3.5 77077 1fr1A 361 10.10 e.3.1.1 42734 1obfO 335 10.82 c.2.1.3,d.81.1.1 86768,86769 2ffyA 358 10.96 e.3.1.1 133394 2guiA 194 11.43 c.55.3.5 135737 1rgyA 360 12.41 e.3.1.1 97456 2i8tA 167 12.56 1fsyA 358 12.92 e.3.1.1 60016 2drwA 363 13.62 e.3.1.1 131674 1zbfA 142 13.63 c.55.3.1 124850 3c9hA 355 14.99 2cjgA 449 15.47 1onhA 364 16.17 e.3.1.1 93357 1l0gA 358 17.14 e.3.1.1 73400 1ci9A 392 17.16 e.3.1.1 64767 2a6tA 271 17.71 a.242.1.1,d.113.1.7 126309,126310 1air 353 18.23 1rgzA 363 20.96 e.3.1.1 97457 1zkjA 359 23.85 1ei5A 520 23.88 b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 2nugA 221 24.56 1v8yA 170 24.61 d.113.1.1 113581 1zy7A 403 25.63 1crwG 333 26.11 c.2.1.3,d.81.1.1 30026,39941 1gd1O 334 28.52 c.2.1.3,d.81.1.1 29962,39877 2e2oA 299 28.78 2riqA 160 31.89 1gca 309 33.42 1f3yA 165 36.09 d.113.1.1 59635 1rh9A 373 37.15 c.1.8.3 118773 2p1jA 186 38.98 2qkbA 154 39.23 2o1cA 150 39.85 2b0vA 153 40.19 d.113.1.1 127650 2fp4B 395 41.64 c.23.4.1,d.142.1.4 133897,133898 2isbA 192 43.77 c.8.9.1 137601 2idrA 177 44.08 1jr3A 373 45.04 a.80.1.1,c.37.1.20 63245,63246 1k3tA 359 48.92 c.2.1.3,d.81.1.1 72022,72023 1eudB 396 48.99 c.23.4.1,d.142.1.4 31150,41571 1w0hA 204 49.27 c.55.3.5 114064 1f21A 155 52.19 c.55.3.1 33550 2ae6A 166 52.49 d.108.1.1 126600 1v84A 253 55.05 c.68.1.7 108419 1dssG 333 57.64 c.2.1.3,d.81.1.1 30022,39937 1pwgA 349 57.73 e.3.1.1 104340 1g8mA 593 57.82 c.24.1.3,c.97.1.4 60371,60372 1pot 325 62.65 1pbeA 394 65.73 c.3.1.2,d.16.1.2 30338,37869 2z3hA 130 67.56 1rkd 309 71.10 2aukA 190 75.39 1jykA 254 75.67 c.68.1.13 67458 1v82A 253 77.03 c.68.1.7 108415 1b77A 228 81.69 d.131.1.2,d.131.1.2 41362,41363 1j7lA 264 83.39 d.144.1.6 62697 1udcA 338 83.75 c.2.1.2 29785 2z10A 194 84.33 1eu1A 780 85.31 b.52.2.2,c.81.1.1 26903,35311 2fckA 181 86.17 d.108.1.1 133272 1viwB 198 86.79 b.29.1.1 24170 1qo8A 566 87.30 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316