# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2nx8A 179 1.45e-29 2b3jA 159 3.59e-29 c.97.1.2 127787 1z3aA 168 1.96e-28 c.97.1.2 124396 2a8nA 144 7.90e-28 c.97.1.2 126408 1wwrA 171 9.06e-28 c.97.1.2 121366 1wkqA 164 1.17e-26 c.97.1.2 109393 1tiyA 164 1.55e-26 c.97.1.2 107012 2g84A 197 8.33e-26 c.97.1.2 134766 1p6oA 161 2.57e-25 c.97.1.2 94185 1uaqA 158 5.39e-25 c.97.1.2 88386 2hvwA 184 2.02e-24 1vq2A 193 4.42e-22 c.97.1.2 114004 2b3zA 373 1.28e-21 c.71.1.2,c.97.1.2 127807,127808 2hxvA 360 3.33e-21 c.71.1.2,c.97.1.2 136859,136860 2fr5A 146 0.000193 c.97.1.1 133965 1r5tA 142 0.000791 c.97.1.1 104812 1jtkA 136 0.002181 c.97.1.1 71862 1uwzA 136 0.003031 c.97.1.1 108081 3b8fA 142 0.01389 1wn5A 130 0.02250 c.97.1.1 121082 2nytA 190 0.07077 1ctt 294 0.1006 2z3hA 130 0.1402 2cjgA 449 0.4446 1fr1A 361 0.4764 e.3.1.1 42734 1onhA 364 0.6834 e.3.1.1 93357 1fsyA 358 0.7365 e.3.1.1 60016 1rgyA 360 0.7380 e.3.1.1 97456 2ffyA 358 0.8297 e.3.1.1 133394 1rgzA 363 0.9892 e.3.1.1 97457 1zkjA 359 1.022 1l0gA 358 2.060 e.3.1.1 73400 1rh9A 373 2.566 c.1.8.3 118773 1ci9A 392 2.771 e.3.1.1 64767 1j53A 186 2.995 c.55.3.5 77076 1zbfA 142 6.120 c.55.3.1 124850 1ei5A 520 9.112 b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 1cttA 294 10.89 c.97.1.1,c.97.1.1 36022,36023 2fckA 181 11.06 d.108.1.1 133272 1hrhA 136 12.66 c.55.3.1 33577 1pczA 191 13.61 d.129.1.1,d.129.1.1 41292,41293 1obfO 335 14.42 c.2.1.3,d.81.1.1 86768,86769 1air 353 15.07 1v8yA 170 15.55 d.113.1.1 113581 1dssG 333 16.24 c.2.1.3,d.81.1.1 30022,39937 1yqsA 349 17.29 e.3.1.1 123899 2qkmB 266 17.61 2drwA 363 19.39 e.3.1.1 131674 1zy7A 403 19.68 1crwG 333 22.10 c.2.1.3,d.81.1.1 30026,39941 2vojA 371 22.99 1gceA 364 26.21 e.3.1.1 42738 1d3uA 181 28.64 d.129.1.1,d.129.1.1 41290,41291 2i8tA 167 29.00 1k3tA 359 29.80 c.2.1.3,d.81.1.1 72022,72023 2guiA 194 30.65 c.55.3.5 135737 2hb5A 164 32.91 2vhxA 377 35.01 1j54A 186 37.13 c.55.3.5 77077 2nugA 221 39.86 1aisA 182 41.44 d.129.1.1,d.129.1.1 41288,41289 2b0vA 153 43.59 d.113.1.1 127650 1vk9A 151 44.07 c.97.1.3 108640 1u8fO 335 45.26 c.2.1.3,d.81.1.1 119626,119627 2a6tA 271 48.33 a.242.1.1,d.113.1.7 126309,126310 1vicA 262 51.07 c.68.1.13 100756 1ydnA 295 52.56 2qkbA 154 53.48 1uj6A 227 54.50 c.124.1.4,d.58.40.1 107898,107899 1ec5A 50 54.84 k.8.1.1 46421 1bwsA 321 55.73 c.2.1.2 29812 2qgnA 322 56.91 2aj6A 159 58.57 d.108.1.1 126841 2cw6A 298 60.27 1jtdB 273 61.11 b.69.5.2 67265 1nn7A 105 66.07 d.42.1.2 85894 1ryaA 160 69.31 d.113.1.5 105122 2uubK 129 71.81 c.55.4.1 139942 2f8mA 244 72.85 1rq2A 382 73.65 c.32.1.1,d.79.2.1 105048,105049 1c9bB 180 73.73 d.129.1.1,d.129.1.1 41216,41217 1fxoA 293 73.81 c.68.1.6 34524 1f3yA 165 74.56 d.113.1.1 59635 1gd1O 334 76.00 c.2.1.3,d.81.1.1 29962,39877 2e2oA 299 76.39 3bc8A 450 77.61 1v72A 356 78.18 c.67.1.1 119860 2hlkA 255 78.76 1w2tA 432 79.75 b.29.1.19,b.67.2.3 120607,120608 1tzfA 259 82.38 c.68.1.13 107476 3c9hA 355 82.68 2f06A 144 86.53 d.58.18.11,d.58.18.11 132652,132653 2h4aA 325 86.88 1kagA 173 88.44 c.37.1.2 72249