# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2nx8A 179 2.54e-18 2b3jA 159 3.85e-18 c.97.1.2 127787 1z3aA 168 7.49e-18 c.97.1.2 124396 2a8nA 144 1.99e-17 c.97.1.2 126408 1wwrA 171 3.47e-17 c.97.1.2 121366 1wkqA 164 1.13e-16 c.97.1.2 109393 1tiyA 164 1.46e-16 c.97.1.2 107012 1p6oA 161 3.75e-16 c.97.1.2 94185 2g84A 197 4.54e-16 c.97.1.2 134766 1uaqA 158 5.04e-16 c.97.1.2 88386 2hvwA 184 1.10e-15 2b3zA 373 1.32e-13 c.71.1.2,c.97.1.2 127807,127808 1vq2A 193 2.02e-13 c.97.1.2 114004 2hxvA 360 2.63e-13 c.71.1.2,c.97.1.2 136859,136860 2fr5A 146 0.008882 c.97.1.1 133965 1r5tA 142 0.04634 c.97.1.1 104812 1jtkA 136 0.1044 c.97.1.1 71862 1ctt 294 0.1096 1uwzA 136 0.1565 c.97.1.1 108081 1wn5A 130 0.3371 c.97.1.1 121082 3b8fA 142 0.5829 1cttA 294 0.8042 c.97.1.1,c.97.1.1 36022,36023 2nytA 190 1.227 1j53A 186 1.331 c.55.3.5 77076 2z3hA 130 2.313 2qkmB 266 4.135 1fr1A 361 4.694 e.3.1.1 42734 1fsyA 358 5.382 e.3.1.1 60016 1yqsA 349 5.479 e.3.1.1 123899 1onhA 364 5.500 e.3.1.1 93357 1j54A 186 7.421 c.55.3.5 77077 1j3wA 163 8.579 d.110.7.1 90833 2ffyA 358 8.736 e.3.1.1 133394 1zy7A 403 9.022 1rgzA 363 9.297 e.3.1.1 97457 1rgyA 360 10.78 e.3.1.1 97456 2guiA 194 12.01 c.55.3.5 135737 1l0gA 358 12.25 e.3.1.1 73400 1rh9A 373 14.11 c.1.8.3 118773 1zkjA 359 16.70 2drwA 363 17.15 e.3.1.1 131674 2fp4B 395 18.74 c.23.4.1,d.142.1.4 133897,133898 1g8mA 593 20.74 c.24.1.3,c.97.1.4 60371,60372 1ei5A 520 23.07 b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 2p1jA 186 24.41 1zczA 464 26.16 c.24.1.3,c.97.1.4 124923,124924 2cjgA 449 26.60 1ci9A 392 26.79 e.3.1.1 64767 2a6tA 271 27.23 a.242.1.1,d.113.1.7 126309,126310 1zbfA 142 28.04 c.55.3.1 124850 1v8yA 170 28.48 d.113.1.1 113581 2b0vA 153 30.76 d.113.1.1 127650 2i8tA 167 31.59 2e2oA 299 34.70 1eudB 396 34.80 c.23.4.1,d.142.1.4 31150,41571 2nugA 221 35.45 2riqA 160 35.84 1air 353 36.20 2ae6A 166 37.16 d.108.1.1 126600 1j7lA 264 38.00 d.144.1.6 62697 3c9hA 355 40.77 1rkd 309 41.22 1w0hA 204 45.19 c.55.3.5 114064 1b77A 228 46.08 d.131.1.2,d.131.1.2 41362,41363 2o1cA 150 47.71 2abqA 306 50.00 c.72.1.1 126528 2imrA 420 50.52 1pwgA 349 53.11 e.3.1.1 104340 1obfO 335 57.24 c.2.1.3,d.81.1.1 86768,86769 2hqyA 305 59.27 1m9nA 613 60.02 c.24.1.3,c.97.1.4 78870,78871 1ubpC 570 61.20 b.92.1.1,c.1.9.2 28432,29054 2eb4A 267 66.25 1jykA 254 66.65 c.68.1.13 67458 1jr3A 373 67.89 a.80.1.1,c.37.1.20 63245,63246 1f21A 155 68.03 c.55.3.1 33550 1f3yA 165 68.51 d.113.1.1 59635 1crwG 333 70.17 c.2.1.3,d.81.1.1 30026,39941 4ubpC 570 74.47 b.92.1.1,c.1.9.2 28431,29053 1ejrC 567 79.62 b.92.1.1,c.1.9.2 28420,29042 2aukA 190 84.92 1zc6A 305 88.40 c.55.1.5,c.55.1.5 124888,124889