# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2nx8A 179 1.40e-23 2b3jA 159 2.64e-23 c.97.1.2 127787 2a8nA 144 4.16e-23 c.97.1.2 126408 1z3aA 168 7.66e-23 c.97.1.2 124396 1wwrA 171 6.19e-22 c.97.1.2 121366 1wkqA 164 3.97e-21 c.97.1.2 109393 1tiyA 164 5.26e-21 c.97.1.2 107012 1uaqA 158 1.10e-20 c.97.1.2 88386 1p6oA 161 1.26e-20 c.97.1.2 94185 2g84A 197 1.47e-20 c.97.1.2 134766 2hvwA 184 2.87e-20 1vq2A 193 7.72e-17 c.97.1.2 114004 2b3zA 373 4.59e-16 c.71.1.2,c.97.1.2 127807,127808 2hxvA 360 6.17e-15 c.71.1.2,c.97.1.2 136859,136860 1ctt 294 0.001315 1r5tA 142 0.002015 c.97.1.1 104812 2fr5A 146 0.003971 c.97.1.1 133965 1cttA 294 0.01144 c.97.1.1,c.97.1.1 36022,36023 2z3hA 130 0.01426 1jtkA 136 0.05316 c.97.1.1 71862 1wn5A 130 0.05767 c.97.1.1 121082 1uwzA 136 0.06122 c.97.1.1 108081 3b8fA 142 0.1328 2nytA 190 0.6905 2dkhA 639 0.9042 2eceA 462 1.783 1j53A 186 1.836 c.55.3.5 77076 2qkmB 266 2.569 1eejA 216 2.845 c.47.1.9,d.17.3.1 33057,38071 2a6tA 271 3.090 a.242.1.1,d.113.1.7 126309,126310 1qxoA 388 3.571 d.258.1.1 96539 1j3wA 163 4.051 d.110.7.1 90833 1bf6A 291 4.544 c.1.9.3 29065 2pi6A 361 5.052 2qgmA 445 5.579 1fsyA 358 5.615 e.3.1.1 60016 1pcl 355 5.975 1onhA 364 6.040 e.3.1.1 93357 1rgzA 363 6.602 e.3.1.1 97457 2ffyA 358 6.756 e.3.1.1 133394 1u4gA 301 7.663 d.92.1.2 107670 2hf0A 316 8.087 1hjxA 362 8.231 c.1.8.5,d.26.3.1 83512,83513 2hqyA 305 9.225 2i8tA 167 9.244 1bw0A 416 10.01 c.67.1.1 34385 1mqeA 207 11.19 d.113.1.1 91394 1z45A 699 11.31 b.30.5.4,c.2.1.2 124427,124428 1l0gA 358 12.84 e.3.1.1 73400 1j54A 186 12.97 c.55.3.5 77077 3cbwA 353 13.03 1j7lA 264 13.06 d.144.1.6 62697 2qecA 204 13.23 2drwA 363 13.96 e.3.1.1 131674 1rgyA 360 15.79 e.3.1.1 97456 2qm1A 326 16.00 2uwxA 494 16.45 e.3.1.1 140002 1m9nA 613 16.66 c.24.1.3,c.97.1.4 78870,78871 1f3yA 165 17.17 d.113.1.1 59635 2riqA 160 17.85 2ihtA 573 17.86 1viwB 198 19.02 b.29.1.1 24170 1qopB 396 19.52 c.79.1.1 35270 1sqjA 789 19.64 b.69.13.1,b.69.13.1 105918,105919 1cs0A 1073 20.20 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 2guiA 194 21.94 c.55.3.5 135737 1qs0A 407 22.29 c.36.1.11 31829 2qgyA 391 22.82 1vasA 137 23.63 a.18.1.1 16404 1w0hA 204 24.98 c.55.3.5 114064 1sh7A 284 25.20 2qwxA 231 26.33 1hkkA 364 26.33 c.1.8.5,d.26.3.1 90634,90635 1ehiA 377 26.38 c.30.1.2,d.142.1.1 31716,41484 1v84A 253 26.87 c.68.1.7 108419 1gtkA 313 29.44 c.94.1.1,d.50.2.1 76346,76347 1e4fT 419 29.76 c.55.1.1,c.55.1.1 33453,33454 1pc3A 350 30.73 c.94.1.1 104102 1vcdA 126 30.99 d.113.1.1 119970 1v82A 253 31.25 c.68.1.7 108415 1rtqA 299 31.70 c.56.5.4 97819 2ap1A 327 31.71 c.55.1.10,c.55.1.10 127108,127109 1qcwA 410 31.71 c.1.4.1 28622 1gq2A 555 32.06 c.2.1.7,c.58.1.3 70308,70309 2nugA 221 33.08 1ea9C 583 33.13 b.1.18.2,b.71.1.1,c.1.8.1 70087,70088,70089 1obfO 335 33.51 c.2.1.3,d.81.1.1 86768,86769 2z43A 324 33.86 2d0jA 246 34.12 2e2oA 299 34.79 1sjyA 159 35.29 d.113.1.1 98900 1yqsA 349 35.62 e.3.1.1 123899 2nycA 144 35.98 d.37.1.1 138812 1d3uA 181 36.22 d.129.1.1,d.129.1.1 41290,41291 2d1cA 496 36.87 1b77A 228 36.92 d.131.1.2,d.131.1.2 41362,41363 1adjA 421 37.70 c.51.1.1,d.104.1.1 33188,40737 2eplX 627 37.93 1vr9A 213 38.20 d.37.1.1,d.37.1.1 120446,120447 1zdrA 164 39.27 1kwsA 261 39.65 c.68.1.7 73083 1fggA 261 40.19 c.68.1.7 34576 2b0vA 153 41.47 d.113.1.1 127650 1e58A 249 41.56 c.60.1.1 59262 2rhmA 193 42.37 2eiyA 308 42.64 2o1cA 150 43.13 1gaxA 862 45.05 b.51.1.1,c.26.1.1,a.2.7.3,a.27.1.1 26893,31595,75842,75843 1jeqA 609 45.71 a.140.2.1,b.131.1.1,c.62.1.3 64748,90366,90367 2jc4A 256 46.80 2nu8B 388 48.30 2hq6A 185 48.37 1zbfA 142 49.08 c.55.3.1 124850 1jtaA 361 49.10 b.80.1.1 71859 2abqA 306 49.23 c.72.1.1 126528 2acvA 463 49.60 1vf8A 377 49.79 c.1.8.5,d.26.3.1 120029,120030 1httA 423 50.47 c.51.1.1,d.104.1.1 33178,40727 1idk 359 50.68 1xnzA 264 50.77 d.127.1.1 115673 2pg0A 385 51.72 1eagA 342 52.63 b.50.1.2 26826 1fc2D 224 53.17 b.1.1.2,b.1.1.2 21516,21517 1fr1A 361 53.63 e.3.1.1 42734 2gfhA 260 55.18 c.108.1.6 135096 2h0rA 216 55.72 1lokA 291 56.08 c.56.5.4 78122 1hnjA 317 56.13 c.95.1.2,c.95.1.2 35969,35970 1jykA 254 58.92 c.68.1.13 67458 2uubK 129 59.18 c.55.4.1 139942 2reeA 224 59.36 1hrhA 136 59.99 c.55.3.1 33577 2fckA 181 60.60 d.108.1.1 133272 2cxaA 256 63.13 d.108.1.6 130993 1e54A 332 63.78 f.4.3.1 59258 2c40A 312 63.82 1kmmA 424 63.92 c.51.1.1,d.104.1.1 33174,40723 2cy2A 174 64.45 d.108.1.1 131016 1zy7A 403 65.17 1xvlA 321 66.40 c.92.2.2 122380 1ex2A 189 66.45 c.51.4.2 33225 1l8bA 190 66.58 d.86.1.1 73683 1vk9A 151 67.13 c.97.1.3 108640 1ffyA 917 67.40 a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 2cjgA 449 68.25 1vl2A 421 69.52 c.26.2.1,d.210.1.1 108708,108709 2nn6B 249 70.27 2nxwA 565 71.18 2idrA 177 72.60 2zdhA 319 72.74 1x31B 404 73.48 1vi1A 345 74.03 c.77.1.4 100724 3pghA 587 76.48 a.93.1.2,g.3.11.1 18726,44269 3biqA 467 78.42 1veaA 148 79.61 d.275.1.1 108529 1nwzA 125 80.21 d.110.3.1 86370 2aaoA 166 80.42 1r30A 369 80.99 c.1.28.1 96895 1pydA 556 81.42 c.31.1.3,c.36.1.5,c.36.1.9 31735,31773,31774 2ae6A 166 81.77 d.108.1.1 126600 3db2A 354 82.05 1ktgA 138 82.31 d.113.1.1 72972 1fk9A 543 83.62 c.55.3.1,e.8.1.2 33607,43080 1qpbA 563 84.30 c.31.1.3,c.36.1.5,c.36.1.9 31739,31781,31782 2a7kA 250 84.31 c.14.1.3 126341 3pyp 125 85.07 2vglS 142 85.27 2hoeA 380 85.41 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 1vhsA 175 87.19 d.108.1.1 100698 2uxyA 341 87.26 1efdN 266 88.07 c.92.2.1 35597 1wrvA 308 89.29 2qkpA 151 89.84 3ctpA 330 89.88