# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2nx8A 179 2.17e-19 2b3jA 159 3.07e-19 c.97.1.2 127787 1z3aA 168 7.05e-19 c.97.1.2 124396 2a8nA 144 2.18e-18 c.97.1.2 126408 1wwrA 171 4.82e-18 c.97.1.2 121366 1wkqA 164 1.41e-17 c.97.1.2 109393 1tiyA 164 1.74e-17 c.97.1.2 107012 1p6oA 161 3.50e-17 c.97.1.2 94185 2g84A 197 4.25e-17 c.97.1.2 134766 1uaqA 158 4.50e-17 c.97.1.2 88386 2hvwA 184 1.00e-16 2b3zA 373 1.69e-14 c.71.1.2,c.97.1.2 127807,127808 1vq2A 193 3.71e-14 c.97.1.2 114004 2hxvA 360 3.91e-14 c.71.1.2,c.97.1.2 136859,136860 2fr5A 146 0.01230 c.97.1.1 133965 1r5tA 142 0.09116 c.97.1.1 104812 1ctt 294 0.1111 1jtkA 136 0.1568 c.97.1.1 71862 1uwzA 136 0.2115 c.97.1.1 108081 1cttA 294 0.5021 c.97.1.1,c.97.1.1 36022,36023 1wn5A 130 0.8488 c.97.1.1 121082 2nytA 190 1.381 1j53A 186 1.575 c.55.3.5 77076 3b8fA 142 1.630 2qkmB 266 3.995 1yqsA 349 6.265 e.3.1.1 123899 1onhA 364 6.638 e.3.1.1 93357 1fr1A 361 6.798 e.3.1.1 42734 1fsyA 358 7.059 e.3.1.1 60016 2z3hA 130 7.530 1j3wA 163 7.573 d.110.7.1 90833 1zy7A 403 8.612 1j54A 186 10.17 c.55.3.5 77077 2ffyA 358 12.07 e.3.1.1 133394 1rgzA 363 12.17 e.3.1.1 97457 1rgyA 360 14.94 e.3.1.1 97456 2fp4B 395 15.24 c.23.4.1,d.142.1.4 133897,133898 2drwA 363 15.73 e.3.1.1 131674 2guiA 194 15.84 c.55.3.5 135737 1l0gA 358 15.88 e.3.1.1 73400 1rh9A 373 18.81 c.1.8.3 118773 1zkjA 359 19.08 1ei5A 520 25.59 b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 2cjgA 449 26.00 2e2oA 299 26.38 1air 353 27.03 2a6tA 271 27.24 a.242.1.1,d.113.1.7 126309,126310 2i8tA 167 27.42 1eudB 396 27.95 c.23.4.1,d.142.1.4 31150,41571 2nugA 221 28.20 1g8mA 593 33.85 c.24.1.3,c.97.1.4 60371,60372 1w0hA 204 34.78 c.55.3.5 114064 2o1cA 150 36.56 1v8yA 170 36.90 d.113.1.1 113581 1ci9A 392 36.96 e.3.1.1 64767 3c9hA 355 37.91 1zbfA 142 40.89 c.55.3.1 124850 2b0vA 153 41.10 d.113.1.1 127650 1jr3A 373 42.35 a.80.1.1,c.37.1.20 63245,63246 2riqA 160 44.22 1rkd 309 44.27 2p1jA 186 44.60 1j7lA 264 51.91 d.144.1.6 62697 2abqA 306 54.18 c.72.1.1 126528 1obfO 335 55.36 c.2.1.3,d.81.1.1 86768,86769 1zczA 464 58.15 c.24.1.3,c.97.1.4 124923,124924 1jykA 254 60.58 c.68.1.13 67458 2ae6A 166 66.05 d.108.1.1 126600 1pwgA 349 70.06 e.3.1.1 104340 2aukA 190 70.94 1f3yA 165 72.67 d.113.1.1 59635 2h4aA 325 76.98 2idrA 177 77.68 2isbA 192 77.77 c.8.9.1 137601 1crwG 333 85.33 c.2.1.3,d.81.1.1 30026,39941 2ch5A 347 85.52 c.55.1.5,c.55.1.5 130453,130454