# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2nx8A 179 1.76e-19 2b3jA 159 3.05e-19 c.97.1.2 127787 1z3aA 168 5.90e-19 c.97.1.2 124396 2a8nA 144 2.20e-18 c.97.1.2 126408 1wwrA 171 1.00e-17 c.97.1.2 121366 1tiyA 164 1.87e-17 c.97.1.2 107012 1wkqA 164 1.94e-17 c.97.1.2 109393 2g84A 197 2.23e-17 c.97.1.2 134766 1uaqA 158 2.99e-17 c.97.1.2 88386 1p6oA 161 3.33e-17 c.97.1.2 94185 2hvwA 184 1.78e-16 2b3zA 373 2.89e-14 c.71.1.2,c.97.1.2 127807,127808 1vq2A 193 4.24e-14 c.97.1.2 114004 2hxvA 360 6.46e-14 c.71.1.2,c.97.1.2 136859,136860 2fr5A 146 0.1148 c.97.1.1 133965 1r5tA 142 0.8286 c.97.1.1 104812 2nytA 190 0.8497 1cttA 294 1.197 c.97.1.1,c.97.1.1 36022,36023 1j53A 186 1.622 c.55.3.5 77076 1ctt 294 2.068 1jtkA 136 2.156 c.97.1.1 71862 1uwzA 136 3.408 c.97.1.1 108081 2qkmB 266 6.536 1wn5A 130 7.572 c.97.1.1 121082 1fr1A 361 12.14 e.3.1.1 42734 1yqsA 349 13.56 e.3.1.1 123899 1air 353 13.71 1gd1O 334 13.87 c.2.1.3,d.81.1.1 29962,39877 1onhA 364 14.07 e.3.1.1 93357 1j54A 186 14.89 c.55.3.5 77077 1fsyA 358 15.32 e.3.1.1 60016 1j3wA 163 15.78 d.110.7.1 90833 1zy7A 403 16.20 2ffyA 358 16.29 e.3.1.1 133394 3b8fA 142 17.38 2guiA 194 17.92 c.55.3.5 135737 1rgyA 360 18.22 e.3.1.1 97456 1crwG 333 18.77 c.2.1.3,d.81.1.1 30026,39941 2a6tA 271 21.51 a.242.1.1,d.113.1.7 126309,126310 2drwA 363 22.50 e.3.1.1 131674 1obfO 335 23.46 c.2.1.3,d.81.1.1 86768,86769 2i8tA 167 23.72 1rgzA 363 26.69 e.3.1.1 97457 1zkjA 359 27.00 1jr3A 373 28.68 a.80.1.1,c.37.1.20 63245,63246 1eudB 396 29.98 c.23.4.1,d.142.1.4 31150,41571 3c9hA 355 30.37 1l0gA 358 31.92 e.3.1.1 73400 2fp4B 395 32.40 c.23.4.1,d.142.1.4 133897,133898 1v8yA 170 34.85 d.113.1.1 113581 2riqA 160 35.42 1ei5A 520 35.90 b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 1zbfA 142 40.31 c.55.3.1 124850 1dssG 333 48.33 c.2.1.3,d.81.1.1 30022,39937 2b0vA 153 49.81 d.113.1.1 127650 2o1cA 150 52.51 2cjgA 449 56.67 1ci9A 392 57.24 e.3.1.1 64767 1f3yA 165 58.00 d.113.1.1 59635 1rh9A 373 59.02 c.1.8.3 118773 1w0hA 204 62.68 c.55.3.5 114064 2p1jA 186 66.66 2e2oA 299 66.98 1k3tA 359 77.24 c.2.1.3,d.81.1.1 72022,72023 1j7lA 264 77.34 d.144.1.6 62697 2ae6A 166 77.55 d.108.1.1 126600 1v84A 253 77.65 c.68.1.7 108419 2nugA 221 78.52 1weoA 93 80.34 g.44.1.1 114561 1pot 325 80.69