# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2nx8A 179 7.54e-20 2b3jA 159 1.24e-19 c.97.1.2 127787 1z3aA 168 2.25e-19 c.97.1.2 124396 2a8nA 144 6.58e-19 c.97.1.2 126408 1wwrA 171 1.96e-18 c.97.1.2 121366 1wkqA 164 6.13e-18 c.97.1.2 109393 1tiyA 164 6.54e-18 c.97.1.2 107012 2g84A 197 1.10e-17 c.97.1.2 134766 1p6oA 161 1.95e-17 c.97.1.2 94185 1uaqA 158 2.21e-17 c.97.1.2 88386 2hvwA 184 8.62e-17 2b3zA 373 1.11e-14 c.71.1.2,c.97.1.2 127807,127808 1vq2A 193 2.20e-14 c.97.1.2 114004 2hxvA 360 2.65e-14 c.71.1.2,c.97.1.2 136859,136860 2fr5A 146 0.07227 c.97.1.1 133965 1r5tA 142 0.7599 c.97.1.1 104812 1ctt 294 0.9074 1jtkA 136 1.136 c.97.1.1 71862 2nytA 190 1.445 1j53A 186 1.547 c.55.3.5 77076 1uwzA 136 1.615 c.97.1.1 108081 1cttA 294 2.275 c.97.1.1,c.97.1.1 36022,36023 1fr1A 361 3.816 e.3.1.1 42734 1fsyA 358 3.967 e.3.1.1 60016 2ffyA 358 4.783 e.3.1.1 133394 1rgyA 360 4.812 e.3.1.1 97456 1yqsA 349 5.008 e.3.1.1 123899 1onhA 364 5.092 e.3.1.1 93357 1wn5A 130 5.350 c.97.1.1 121082 1zkjA 359 8.063 1l0gA 358 8.704 e.3.1.1 73400 2fp4B 395 9.707 c.23.4.1,d.142.1.4 133897,133898 1rgzA 363 10.60 e.3.1.1 97457 2drwA 363 10.69 e.3.1.1 131674 2qkmB 266 10.71 1j3wA 163 10.86 d.110.7.1 90833 1j54A 186 12.53 c.55.3.5 77077 1air 353 12.76 3b8fA 142 16.07 1ci9A 392 16.09 e.3.1.1 64767 2guiA 194 16.53 c.55.3.5 135737 1zy7A 403 17.80 3c9hA 355 22.13 1rh9A 373 22.14 c.1.8.3 118773 1ei5A 520 22.20 b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 1zbfA 142 22.96 c.55.3.1 124850 2i8tA 167 27.74 1jr3A 373 27.89 a.80.1.1,c.37.1.20 63245,63246 2a6tA 271 30.68 a.242.1.1,d.113.1.7 126309,126310 1eudB 396 32.89 c.23.4.1,d.142.1.4 31150,41571 2nugA 221 37.33 1g8mA 593 40.15 c.24.1.3,c.97.1.4 60371,60372 1v8yA 170 41.04 d.113.1.1 113581 1obfO 335 44.17 c.2.1.3,d.81.1.1 86768,86769 2b0vA 153 44.94 d.113.1.1 127650 2p1jA 186 46.75 2e2oA 299 49.38 1w0hA 204 50.91 c.55.3.5 114064 1crwG 333 51.14 c.2.1.3,d.81.1.1 30026,39941 1pwgA 349 51.86 e.3.1.1 104340 1v84A 253 53.04 c.68.1.7 108419 1gd1O 334 55.25 c.2.1.3,d.81.1.1 29962,39877 1zczA 464 58.64 c.24.1.3,c.97.1.4 124923,124924 2aukA 190 58.84 1rkd 309 61.43 1pbeA 394 63.28 c.3.1.2,d.16.1.2 30338,37869 1b77A 228 65.24 d.131.1.2,d.131.1.2 41362,41363 2ci1A 275 67.65 1f3yA 165 69.54 d.113.1.1 59635 2cjgA 449 73.25 1w2tA 432 76.05 b.29.1.19,b.67.2.3 120607,120608 1jtdB 273 77.01 b.69.5.2 67265 1pot 325 77.60 1v82A 253 78.57 c.68.1.7 108415 1j7lA 264 82.71 d.144.1.6 62697 2z3hA 130 83.55 2hi7B 176 84.46 1qo8A 566 84.48 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 2scuB 388 85.14 c.23.4.1,d.142.1.4 31141,41562 1uypA 432 88.14 b.29.1.19,b.67.2.3 100176,100177 2riqA 160 89.21