# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2nx8A 179 7.98e-22 2b3jA 159 1.43e-21 c.97.1.2 127787 1z3aA 168 3.07e-21 c.97.1.2 124396 2a8nA 144 7.51e-21 c.97.1.2 126408 1wwrA 171 2.76e-20 c.97.1.2 121366 1wkqA 164 8.53e-20 c.97.1.2 109393 1tiyA 164 1.02e-19 c.97.1.2 107012 2g84A 197 2.78e-19 c.97.1.2 134766 1p6oA 161 4.39e-19 c.97.1.2 94185 1uaqA 158 4.64e-19 c.97.1.2 88386 2hvwA 184 1.19e-18 2b3zA 373 3.86e-16 c.71.1.2,c.97.1.2 127807,127808 1vq2A 193 4.34e-16 c.97.1.2 114004 2hxvA 360 7.57e-16 c.71.1.2,c.97.1.2 136859,136860 2fr5A 146 0.02466 c.97.1.1 133965 1r5tA 142 0.3508 c.97.1.1 104812 1ctt 294 0.5616 1jtkA 136 0.6634 c.97.1.1 71862 2nytA 190 0.7254 1j53A 186 0.7256 c.55.3.5 77076 1uwzA 136 1.423 c.97.1.1 108081 1cttA 294 2.418 c.97.1.1,c.97.1.1 36022,36023 1wn5A 130 2.746 c.97.1.1 121082 1yqsA 349 3.144 e.3.1.1 123899 1fr1A 361 3.556 e.3.1.1 42734 2qkmB 266 4.032 1j3wA 163 4.823 d.110.7.1 90833 1fsyA 358 4.948 e.3.1.1 60016 2ffyA 358 5.284 e.3.1.1 133394 1onhA 364 5.595 e.3.1.1 93357 1j54A 186 5.736 c.55.3.5 77077 3b8fA 142 6.930 1rgyA 360 7.426 e.3.1.1 97456 2guiA 194 8.828 c.55.3.5 135737 1zy7A 403 9.679 1l0gA 358 9.784 e.3.1.1 73400 1air 353 10.24 2i8tA 167 11.08 1rgzA 363 12.69 e.3.1.1 97457 1zkjA 359 13.41 2drwA 363 13.61 e.3.1.1 131674 2a6tA 271 16.59 a.242.1.1,d.113.1.7 126309,126310 1ei5A 520 17.57 b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 3c9hA 355 18.46 1v8yA 170 20.10 d.113.1.1 113581 1ci9A 392 22.13 e.3.1.1 64767 2b0vA 153 23.01 d.113.1.1 127650 1jr3A 373 23.08 a.80.1.1,c.37.1.20 63245,63246 1obfO 335 24.97 c.2.1.3,d.81.1.1 86768,86769 1rh9A 373 31.09 c.1.8.3 118773 2fp4B 395 31.31 c.23.4.1,d.142.1.4 133897,133898 2p1jA 186 31.58 1zbfA 142 33.07 c.55.3.1 124850 1eudB 396 34.65 c.23.4.1,d.142.1.4 31150,41571 2e2oA 299 37.34 2cjgA 449 37.96 2nugA 221 41.98 1f3yA 165 42.67 d.113.1.1 59635 2riqA 160 43.05 1g8mA 593 43.88 c.24.1.3,c.97.1.4 60371,60372 1rkd 309 49.52 1w0hA 204 49.69 c.55.3.5 114064 2o1cA 150 50.34 1pwgA 349 50.39 e.3.1.1 104340 1pbeA 394 51.37 c.3.1.2,d.16.1.2 30338,37869 1crwG 333 57.66 c.2.1.3,d.81.1.1 30026,39941 1j7lA 264 58.25 d.144.1.6 62697 1gd1O 334 59.32 c.2.1.3,d.81.1.1 29962,39877 1zczA 464 59.67 c.24.1.3,c.97.1.4 124923,124924 1pot 325 59.78 2aukA 190 61.86 1v84A 253 62.76 c.68.1.7 108419 2z3hA 130 66.86 1qo8A 566 70.30 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 2eb4A 267 70.52 1eu1A 780 70.98 b.52.2.2,c.81.1.1 26903,35311 2imrA 420 72.02 2pqvA 154 72.03 2oodA 475 77.34 1v82A 253 77.65 c.68.1.7 108415 1sdeA 347 79.88 e.3.1.1 112073 1zc6A 305 80.87 c.55.1.5,c.55.1.5 124888,124889 2hi7B 176 82.99 2gnpA 266 83.26 2hqyA 305 83.56 2ae6A 166 87.05 d.108.1.1 126600 1f21A 155 88.56 c.55.3.1 33550 1ryaA 160 88.83 d.113.1.5 105122 1b77A 228 89.57 d.131.1.2,d.131.1.2 41362,41363