# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2nx8A 179 2.98e-28 2b3jA 159 1.03e-27 c.97.1.2 127787 1z3aA 168 2.72e-27 c.97.1.2 124396 2a8nA 144 9.24e-27 c.97.1.2 126408 1wwrA 171 1.45e-26 c.97.1.2 121366 1wkqA 164 8.51e-26 c.97.1.2 109393 1tiyA 164 4.93e-25 c.97.1.2 107012 1p6oA 161 1.93e-24 c.97.1.2 94185 2g84A 197 2.67e-24 c.97.1.2 134766 1uaqA 158 3.57e-24 c.97.1.2 88386 2hvwA 184 1.27e-23 1vq2A 193 2.49e-20 c.97.1.2 114004 2b3zA 373 4.53e-19 c.71.1.2,c.97.1.2 127807,127808 2hxvA 360 9.41e-19 c.71.1.2,c.97.1.2 136859,136860 2fr5A 146 0.006211 c.97.1.1 133965 1r5tA 142 0.008915 c.97.1.1 104812 1jtkA 136 0.02489 c.97.1.1 71862 1uwzA 136 0.02567 c.97.1.1 108081 1wn5A 130 0.05805 c.97.1.1 121082 1ctt 294 0.1805 2nytA 190 0.1820 3b8fA 142 0.2070 2z3hA 130 0.4068 1rgyA 360 0.5843 e.3.1.1 97456 1fr1A 361 0.9251 e.3.1.1 42734 1fsyA 358 0.9620 e.3.1.1 60016 2ffyA 358 1.081 e.3.1.1 133394 1onhA 364 1.284 e.3.1.1 93357 1cttA 294 1.434 c.97.1.1,c.97.1.1 36022,36023 1zkjA 359 1.961 1l0gA 358 3.088 e.3.1.1 73400 1rgzA 363 3.471 e.3.1.1 97457 1yqsA 349 3.749 e.3.1.1 123899 1ei5A 520 3.879 b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 2cjgA 449 5.119 1ci9A 392 5.841 e.3.1.1 64767 2bbdA 350 16.35 1gceA 364 16.82 e.3.1.1 42738 2pw9A 268 17.67 2drwA 363 22.04 e.3.1.1 131674 2fckA 181 22.09 d.108.1.1 133272 1obfO 335 24.20 c.2.1.3,d.81.1.1 86768,86769 1v8yA 170 27.25 d.113.1.1 113581 1pbyB 337 27.87 b.69.2.2 94422 2b0vA 153 31.59 d.113.1.1 127650 1uypA 432 34.77 b.29.1.19,b.67.2.3 100176,100177 2qkmB 266 35.93 1mzyA 333 39.87 b.6.1.3,b.6.1.3 103848,103849 2f06A 144 41.47 d.58.18.11,d.58.18.11 132652,132653 2yrxA 451 42.12 1n08A 163 43.31 b.43.5.1 79730 2fp7B 172 43.67 b.47.1.3 133899 1rh9A 373 44.79 c.1.8.3 118773 1spvA 184 48.74 c.50.1.2 98957 2vhxA 377 49.15 1w2tA 432 51.23 b.29.1.19,b.67.2.3 120607,120608 1et7A 341 51.25 b.6.1.3,b.6.1.3 23070,23071 2i8tA 167 53.41 2acfA 182 53.99 c.50.1.2 126547 1vk9A 151 54.11 c.97.1.3 108640 2abqA 306 54.32 c.72.1.1 126528 1zdsA 336 56.79 b.6.1.3,b.6.1.3 124952,124953 1m4lA 307 56.83 c.56.5.1 78604 1tzfA 259 59.60 c.68.1.13 107476 2vojA 371 60.04 1jmxB 349 61.21 b.69.2.2 66906 1zbfA 142 62.30 c.55.3.1 124850 1zr5A 214 63.64 c.50.1.2 125525 1hcz 252 64.37 1ta9A 450 67.34 1fxoA 293 67.35 c.68.1.6 34524 2oseA 234 70.35 1k3tA 359 77.43 c.2.1.3,d.81.1.1 72022,72023 2pqvA 154 78.27 2fomB 185 81.04 b.47.1.3 133884