# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2nx8A 179 3.91e-22 2b3jA 159 1.20e-21 c.97.1.2 127787 1z3aA 168 1.88e-21 c.97.1.2 124396 2a8nA 144 8.04e-21 c.97.1.2 126408 1wwrA 171 1.27e-20 c.97.1.2 121366 2g84A 197 1.28e-19 c.97.1.2 134766 1wkqA 164 1.86e-19 c.97.1.2 109393 1tiyA 164 2.67e-19 c.97.1.2 107012 1p6oA 161 6.09e-19 c.97.1.2 94185 1uaqA 158 7.59e-19 c.97.1.2 88386 2hvwA 184 4.69e-18 2b3zA 373 3.23e-16 c.71.1.2,c.97.1.2 127807,127808 1vq2A 193 6.27e-16 c.97.1.2 114004 2hxvA 360 2.55e-15 c.71.1.2,c.97.1.2 136859,136860 1r5tA 142 0.07394 c.97.1.1 104812 2fr5A 146 0.07758 c.97.1.1 133965 1wn5A 130 0.1629 c.97.1.1 121082 3b8fA 142 0.1980 1ctt 294 0.5422 1jtkA 136 0.5912 c.97.1.1 71862 2nytA 190 0.6837 1uwzA 136 0.6858 c.97.1.1 108081 2z3hA 130 1.266 1onhA 364 1.726 e.3.1.1 93357 2cjgA 449 1.819 1cttA 294 2.081 c.97.1.1,c.97.1.1 36022,36023 1fsyA 358 2.657 e.3.1.1 60016 1fr1A 361 2.675 e.3.1.1 42734 1rgzA 363 3.621 e.3.1.1 97457 2ffyA 358 3.933 e.3.1.1 133394 1l0gA 358 5.641 e.3.1.1 73400 1zkjA 359 6.513 1rgyA 360 6.558 e.3.1.1 97456 1ci9A 392 10.74 e.3.1.1 64767 2i8tA 167 12.64 1ei5A 520 12.98 b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 1obfO 335 14.54 c.2.1.3,d.81.1.1 86768,86769 1zy7A 403 15.05 2uwxA 494 16.88 e.3.1.1 140002 2a6tA 271 17.55 a.242.1.1,d.113.1.7 126309,126310 1rh9A 373 19.40 c.1.8.3 118773 1gceA 364 21.62 e.3.1.1 42738 2v2fF 390 22.44 2qkmB 266 22.49 2drwA 363 23.76 e.3.1.1 131674 1pczA 191 26.00 d.129.1.1,d.129.1.1 41292,41293 2ae6A 166 26.93 d.108.1.1 126600 1vk9A 151 27.64 c.97.1.3 108640 1zczA 464 37.14 c.24.1.3,c.97.1.4 124923,124924 1j53A 186 38.20 c.55.3.5 77076 1yqsA 349 40.70 e.3.1.1 123899 1zodA 433 43.79 c.67.1.4 125437 1j3wA 163 45.26 d.110.7.1 90833 2fp7B 172 48.03 b.47.1.3 133899 2bg1A 494 49.53 e.3.1.1 128457 1p4kA 295 52.71 d.153.1.5 87772 1zbfA 142 58.72 c.55.3.1 124850 1f3yA 165 64.69 d.113.1.1 59635 1v8yA 170 65.16 d.113.1.1 113581 1hrhA 136 66.37 c.55.3.1 33577 1crwG 333 68.88 c.2.1.3,d.81.1.1 30026,39941 1dssG 333 69.67 c.2.1.3,d.81.1.1 30022,39937 3bv0A 437 70.81 1n08A 163 74.51 b.43.5.1 79730 1k3tA 359 76.96 c.2.1.3,d.81.1.1 72022,72023 1cdwA 179 78.72 d.129.1.1,d.129.1.1 41212,41213 1ihgA 370 80.84 a.118.8.1,b.62.1.1 62380,62381 2f06A 144 83.07 d.58.18.11,d.58.18.11 132652,132653 1ta9A 450 85.88