# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2nx8A 179 1.81e-11 2b3jA 159 4.79e-11 c.97.1.2 127787 1z3aA 168 1.48e-10 c.97.1.2 124396 1wwrA 171 3.94e-10 c.97.1.2 121366 2a8nA 144 4.20e-10 c.97.1.2 126408 1tiyA 164 9.00e-09 c.97.1.2 107012 1wkqA 164 1.02e-08 c.97.1.2 109393 2g84A 197 2.95e-08 c.97.1.2 134766 2hxvA 360 5.13e-08 c.71.1.2,c.97.1.2 136859,136860 1p6oA 161 6.03e-08 c.97.1.2 94185 2hvwA 184 6.89e-08 1uaqA 158 7.96e-08 c.97.1.2 88386 1vq2A 193 8.65e-08 c.97.1.2 114004 2b3zA 373 3.18e-07 c.71.1.2,c.97.1.2 127807,127808 2fr5A 146 0.2215 c.97.1.1 133965 1r5tA 142 0.2846 c.97.1.1 104812 1uwzA 136 0.5128 c.97.1.1 108081 1jtkA 136 0.7406 c.97.1.1 71862 1wn5A 130 0.7804 c.97.1.1 121082 2z3hA 130 3.099 1onhA 364 4.747 e.3.1.1 93357 1rgzA 363 4.885 e.3.1.1 97457 3b8fA 142 6.437 2pw9A 268 7.400 1fr1A 361 8.388 e.3.1.1 42734 1ctt 294 10.96 1vi2A 300 11.67 c.2.1.7,c.58.1.5 100726,100727 2fckA 181 13.16 d.108.1.1 133272 1vkkA 154 13.60 d.109.1.2 108669 1rgyA 360 14.26 e.3.1.1 97456 1npdA 288 14.58 c.2.1.7,c.58.1.5 80681,80682 1fsyA 358 15.51 e.3.1.1 60016 1o0yA 260 16.86 c.1.10.1 80756 1ci9A 392 18.03 e.3.1.1 64767 3bh1A 507 18.11 1ido 192 18.18 2o28A 184 19.82 1gceA 364 19.84 e.3.1.1 42738 1xwfA 431 21.49 c.2.1.4,c.23.12.3 122392,122393 1li4A 432 22.10 c.2.1.4,c.23.12.3 84616,84617 1zczA 464 22.58 c.24.1.3,c.97.1.4 124923,124924 2qltA 275 24.80 1ybdA 239 25.79 c.73.1.3 122884 1hrhA 136 25.90 c.55.3.1 33577 1hrdA 449 26.26 c.2.1.7,c.58.1.1 30219,33867 2ffyA 358 26.89 e.3.1.1 133394 1b7eA 420 26.95 c.55.3.4 33680 2o2xA 218 27.32 2a1fA 247 27.92 c.73.1.3 125991 1vyrA 364 27.94 c.1.4.1 108906 1lk5A 229 27.98 c.124.1.4,d.58.40.1 73960,73961 1xcbA 211 27.98 a.4.5.38,c.2.1.12 109552,109553 1huxA 270 28.79 c.55.1.5 61278 1v8bA 479 29.93 c.2.1.4,c.23.12.3 113564,113565 1ub3A 220 30.15 c.1.10.1 88395 1l0gA 358 30.39 e.3.1.1 73400 1swvA 267 32.30 c.108.1.3 112134 1bgvA 449 36.43 c.2.1.7,c.58.1.1 30217,33865 1vkmA 297 36.51 c.138.1.1 108670 1brt 277 37.23 1mf7A 194 38.23 c.62.1.1 84937 1o08A 221 38.26 c.108.1.6 86525 1vypX 364 40.92 c.1.4.1 108905 1oakA 196 41.88 c.62.1.1 34138 2o95A 187 41.96 1vk9A 151 42.25 c.97.1.3 108640 2eggA 297 42.55 2bneA 241 43.05 c.73.1.3 128824 1w79A 489 43.08 e.3.1.3 120680 1k89 449 43.15 2dt5A 211 44.32 a.4.5.38,c.2.1.12 131708,131709 1jeyB 565 45.29 b.131.1.2,c.62.1.4 90372,90373 1uwkA 557 45.48 e.51.1.1 108065 1brtA 277 46.62 c.69.1.12 34699 1broA 277 47.98 c.69.1.12 34700 3b3fA 341 49.81 2pibA 216 51.25 1b3rA 431 53.02 c.2.1.4,c.23.12.3 30106,31366 1zkjA 359 54.09 3bcxA 437 55.35 1n3yA 198 56.95 c.62.1.1 79976 2ek8A 421 57.59 1hlgA 371 57.82 c.69.1.6 34656 2bmaA 470 58.56 1l1qA 186 58.85 c.61.1.1 77653 2bkaA 242 58.99 c.2.1.2 128666 2qgyA 391 60.22 3bn1A 373 60.50 2a5hA 416 60.62 2hmvA 144 61.21 c.2.1.9 136615 1zy7A 403 65.24 1wpgA 994 66.79 b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1 114806,114807,114808,114809 1okjA 251 67.23 c.55.1.9,c.55.1.9 103998,103999 1gsjA 258 68.25 c.73.1.2 70397 1oltA 457 68.42 c.1.28.2 93334 1tv8A 340 69.01 c.1.28.3 107352 1atzA 189 72.92 c.62.1.1 34132 1v7pC 200 74.03 c.62.1.1 108408 2gn4A 344 76.81 1e4fT 419 76.88 c.55.1.1,c.55.1.1 33453,33454 2gmsA 390 78.87 1wekA 217 78.89 c.129.1.1 114553 1lfaA 187 79.15 c.62.1.1 34122 1fnsA 196 79.71 c.62.1.1 34136 3dahA 319 79.79 2gl5A 410 81.15 c.1.11.2,d.54.1.1 135336,135337 1a8uA 277 81.29 c.69.1.12 34703 2brxA 244 81.75 c.73.1.3 129028 1i3kA 348 82.49 c.2.1.2 61595 2z10A 194 82.81 2b8eA 273 83.09 c.108.1.7,d.220.1.1 128068,128069 1rqlA 267 83.91 c.108.1.3 97750 1mzhA 225 86.11 c.1.10.1 79698 1mdoA 393 86.26 c.67.1.4 79013 1j96A 323 88.06 c.1.7.1 71616 2odaA 196 89.11