Best Alignments for TR461

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2nx8A	1.8813e-27	2nx8A/TR461-2nx8A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2b3jA	2.0030e-26	2b3jA/TR461-2b3jA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.2
1z3aA	1.5410e-25	1z3aA/TR461-1z3aA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.2
1wkqA	4.1588e-25	1wkqA/TR461-1wkqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.2
1wwrA	6.3951e-25	1wwrA/TR461-1wwrA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.2
2g84A	3.6632e-24	2g84A/TR461-2g84A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.2
2a8nA	1.3148e-23	2a8nA/TR461-2a8nA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.2
2b3zA	2.2236e-22	2b3zA/TR461-2b3zA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.71.1.2 c.97.1.2
2hxvA	3.6094e-22	2hxvA/TR461-2hxvA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.71.1.2 c.97.1.2
1vq2A	9.4601e-22	1vq2A/TR461-1vq2A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.2
1p6oA	1.8958e-21	1p6oA/TR461-1p6oA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.2
2hvwA	1.6135e-20	2hvwA/TR461-2hvwA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1ctt	6.3639e-16	1ctt/TR461-1ctt-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1cttA	1.7045e-15	1cttA/TR461-1cttA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.1 c.97.1.1
3b8fA	4.2445e-10	3b8fA/TR461-3b8fA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2fr5A	6.8602e-08	2fr5A/TR461-2fr5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.1
1uwzA	3.4049e-07	1uwzA/TR461-1uwzA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.1
1r5tA	6.6729e-07	1r5tA/TR461-1r5tA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.1
2z3hA	2.3774e-06	2z3hA/TR461-2z3hA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1wn5A	1.0207e-05	1wn5A/TR461-1wn5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001