# List of top-scoring protein chains for TR461.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1z3aA 168 9.74e-22 c.97.1.2 124396 2b3jA 159 1.18e-20 c.97.1.2 127787 2nx8A 179 1.21e-19 1wwrA 171 1.75e-18 c.97.1.2 121366 2a8nA 144 7.10e-18 c.97.1.2 126408 2o7pA 380 6.71e-17 2g6vA 402 7.84e-17 1wkqA 164 8.21e-17 c.97.1.2 109393 1tiyA 164 8.85e-17 c.97.1.2 107012 2b3zA 373 2.14e-16 c.71.1.2,c.97.1.2 127807,127808 2hxvA 360 3.92e-16 c.71.1.2,c.97.1.2 136859,136860 1ysbA 161 1.15e-14 c.97.1.2 123966 2o3kA 161 1.24e-14 1ysdA 161 1.29e-14 c.97.1.2 123968 1uaqA 158 1.59e-14 c.97.1.2 88386 1p6oA 161 1.77e-14 c.97.1.2 94185 1vq2A 193 1.02e-13 c.97.1.2 114004 2hvwA 184 3.55e-13 2g84A 197 4.40e-12 c.97.1.2 134766 1ux1A 136 3.51e-09 c.97.1.1 108085 1mq0A 140 4.37e-09 c.97.1.1 91389 1ux0A 136 7.77e-09 c.97.1.1 108083 1jtkA 136 7.95e-09 c.97.1.1 71862 2fr5A 146 9.87e-09 c.97.1.1 133965 2d30A 141 1.15e-08 c.97.1.1 131190 1uwzA 136 1.37e-08 c.97.1.1 108081 1r5tA 142 2.86e-06 c.97.1.1 104812 2z3hA 130 0.004831 2z3jA 130 0.005408 1cttA 294 0.005963 c.97.1.1,c.97.1.1 36022,36023 2z3iA 130 0.01877 2nytA 190 0.1238 3b8fA 142 1.067 1vdnA 162 3.563 b.62.1.1 120006 1jfuA 186 4.726 c.47.1.10 62940 2jywA 195 6.089 1qoiA 177 7.518 b.62.1.1 27490 2bgsA 344 8.914 2poyA 186 10.57 1b7bA 310 11.03 c.73.1.1 34963 2rkxA 255 11.11 2oqbA 117 11.95 2vqeE 162 12.84 2o9xA 181 14.27 1r59O 505 15.11 c.55.1.4,c.55.1.4 111697,111698 2hrrA 532 15.24 c.69.1.1 136696 1xupO 487 16.09 c.55.1.4,c.55.1.4 116062,116063 2h7cA 542 16.45 c.69.1.1 136207 1mx1A 548 17.26 c.69.1.1 85165 1n32E 161 17.51 d.14.1.1,d.50.1.2 79873,79874 2qebA 145 21.19 1j6pA 418 22.09 b.92.1.4,c.1.9.9 77089,77090 1qngA 170 24.17 b.62.1.1 27507 1i2kA 269 27.02 e.17.1.1 90661 1wbbA 800 27.23 a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 120837,120838,120839,120840 1wbdA 800 27.27 a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 120841,120842,120843,120844 1wb9A 800 27.29 a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 120833,120834,120835,120836 1e3mA 800 28.16 a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19075,32389,33746,39747 1ng9A 800 28.45 a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 80480,80481,80482,80483 1fljA 259 28.87 b.74.1.1 27954 2e54A 385 29.36 2ordA 397 31.00 1vl0A 292 31.44 c.2.1.2 108704 1pnsE 150 31.94 i.1.1.1 88172 2fu0A 160 33.47 b.62.1.1 134095 2riqA 160 35.13 2g1lA 104 35.24 b.26.1.2 134520 2vpmA 653 37.64 2gy9K 116 38.17 2vobA 652 39.75 2ouwA 138 39.75 2incA 491 41.77 a.25.1.2 137524 1t0qA 498 42.21 a.25.1.2 106220 2jvnA 126 42.52 2qalK 128 42.90 2rdbA 498 43.04 1vs5K 129 43.20 1gkrA 458 44.82 b.92.1.3,c.1.9.6 70251,70252 1qnhA 170 46.62 b.62.1.1 27508 2vr2A 541 47.05 2hqjA 183 47.50 3d0iE 179 49.89 3b3jA 480 50.75 1kutA 230 51.86 d.143.1.1 73017 1bw0A 416 52.14 c.67.1.1 34385 3d0hE 179 52.81 1p1mA 406 55.84 b.92.1.4,c.1.9.9 87696,87697 2rgjA 402 57.87 3c96A 410 57.90 3d0gE 179 58.17 1ynyA 461 60.08 b.92.1.3,c.1.9.6 123764,123765 2pbtA 134 61.13 1x3lA 440 65.57 1erjA 393 66.73 b.69.4.1 27660 2ajfE 180 67.25 d.318.1.1 126884 1usvA 260 71.39 d.14.1.8 99887 1flcA 432 71.65 b.19.1.3,c.23.10.2 23837,31337 2jqjA 151 73.00 2olgA 278 75.91 1sj5A 164 76.70 1usuA 260 78.19 d.14.1.8 99885 2o10A 60 80.18 1xioA 261 80.71 f.13.1.1 115359 2fug1 438 81.48 2dd8S 202 81.90 d.318.1.1 131393 2h28A 130 82.55 d.110.8.1 135995 1gpwA 253 83.06 c.1.2.1 65460 1gesA 450 84.05 c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 1kb0A 677 87.54 a.3.1.6,b.70.1.1 68378,68379 2cq9A 130 88.49 2ht9A 146 88.50 1jw9B 249 88.55 c.111.1.1 67377 1jf8A 131 88.67 c.44.1.1 66621 1mcpH 222 89.19 b.1.1.1,b.1.1.2 19859,20959 1ljuA 131 89.19 c.44.1.1 73944 1vh8A 170 89.43 d.79.5.1 100647 1gerA 450 89.59 c.3.1.5,c.3.1.5,d.87.1.1 30477,30478,40170