# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2nx8A 179 2.32e-24 2b3jA 159 3.34e-24 c.97.1.2 127787 1z3aA 168 1.20e-23 c.97.1.2 124396 1wwrA 171 3.68e-23 c.97.1.2 121366 2g84A 197 7.72e-23 c.97.1.2 134766 1wkqA 164 1.16e-22 c.97.1.2 109393 2a8nA 144 6.71e-22 c.97.1.2 126408 1p6oA 161 2.09e-20 c.97.1.2 94185 1vq2A 193 5.50e-20 c.97.1.2 114004 2b3zA 373 1.04e-19 c.71.1.2,c.97.1.2 127807,127808 2hxvA 360 5.82e-19 c.71.1.2,c.97.1.2 136859,136860 2hvwA 184 7.45e-19 1ctt 294 2.17e-14 1cttA 294 3.15e-14 c.97.1.1,c.97.1.1 36022,36023 3b8fA 142 5.53e-09 2fr5A 146 4.06e-08 c.97.1.1 133965 1uwzA 136 3.56e-07 c.97.1.1 108081 1r5tA 142 9.77e-07 c.97.1.1 104812 2z3hA 130 3.85e-06 1wn5A 130 7.41e-06 c.97.1.1 121082 2nytA 190 0.004223 2qjoA 341 0.3727 1vflA 356 1.226 c.1.9.1 120041 1vhuA 211 1.697 c.50.1.2 100703 2i8tA 167 1.863 3ciwA 348 2.012 1ryaA 160 2.257 d.113.1.5 105122 1ci9A 392 2.639 e.3.1.1 64767 2o5fA 171 3.451 1in4A 334 3.532 a.4.5.11,c.37.1.20 62597,62598 2b06A 155 3.699 d.113.1.1 127624 2oqrA 230 4.885 1rgyA 360 4.996 e.3.1.1 97456 1yqsA 349 5.761 e.3.1.1 123899 1zkjA 359 5.828 1zy7A 403 6.386 2ffyA 358 6.921 e.3.1.1 133394 2fkbA 180 7.060 d.113.1.2 133650 2pqvA 154 7.286 2b0vA 153 7.331 d.113.1.1 127650 2zf5O 497 7.502 2qjtA 352 7.574 2p3rA 510 8.585 c.55.1.4,c.55.1.4 139471,139472 2a6tA 271 9.228 a.242.1.1,d.113.1.7 126309,126310 2d4wA 504 9.500 2a0nA 265 10.47 c.1.2.1 125961 1thfD 253 10.64 c.1.2.1 28535 1rgzA 363 10.84 e.3.1.1 97457 2ewsA 287 11.50 2qecA 204 11.85 2j9oA 298 11.88 1v8yA 170 13.21 d.113.1.1 113581 2fb1A 226 15.12 a.4.5.68,d.113.1.6 133225,133226 2q09A 416 16.31 2icsA 379 16.52 b.92.1.8,c.1.9.14 137241,137242 1bu6O 501 17.01 c.55.1.4,c.55.1.4 33499,33500 1vhzA 198 17.44 d.113.1.1 100718 1zbsA 291 17.67 c.55.1.5,c.55.1.5 124870,124871 3cgvA 397 18.91 2igiA 180 19.81 3cg4A 142 19.81 2vlbA 251 20.06 1shuX 182 20.20 c.62.1.1 98882 1gkrA 458 20.47 b.92.1.3,c.1.9.6 70251,70252 3c3mA 138 21.03 1r2zA 274 21.44 a.156.1.2,b.113.1.1,g.39.1.8 96892,96893,96894 1qkkA 155 21.55 c.23.1.1 31104 1c1dA 355 22.85 c.2.1.7,c.58.1.1 30270,33918 1ys7A 233 23.19 a.4.6.1,c.23.1.1 123961,123962 2fvvA 194 23.30 d.113.1.1 134226 1xhfA 123 23.39 c.23.1.1 122003 1yioA 208 23.49 a.4.6.2,c.23.1.1 123326,123327 2ch5A 347 23.75 c.55.1.5,c.55.1.5 130453,130454 1zh2A 121 23.78 c.23.1.1 125069 2zayA 147 25.07 1yljA 263 25.27 2ivnA 330 25.31 2b9eA 303 25.54 c.66.1.38 128124 2pw9A 268 25.56 1tiqA 180 25.59 d.108.1.1 107010 2rjnA 154 25.64 3cngA 189 26.33 1yghA 164 26.53 d.108.1.1 40802 1bsgA 266 26.91 e.3.1.1 42729 3d0rA 398 27.54 3cfyA 137 27.73 1ei5A 520 27.87 b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 2qzjA 136 28.04 1srrA 124 29.07 c.23.1.1 31110 2dkoA 146 29.12 2drwA 363 31.95 e.3.1.1 131674 3c97A 140 32.91 1qtnA 164 33.66 c.17.1.1 30999 1jl1A 155 33.93 c.55.3.1 66821 1zc6A 305 34.26 c.55.1.5,c.55.1.5 124888,124889 1y7rA 133 34.41 d.108.1.1 122716 1h5yA 253 34.71 c.1.2.1 65638 2gkgA 127 35.00 1hztA 190 35.12 d.113.1.2 61459 1mqeA 207 35.64 d.113.1.1 91394 1dcfA 136 35.93 c.23.1.2 31124 1k2eA 156 37.30 d.113.1.1 72010 1vk9A 151 37.52 c.97.1.3 108640 2pbtA 134 37.75 2ew2A 316 38.53 3cumA 302 39.77 1fxxA 482 39.80 c.55.3.5 33726 1huxA 270 39.99 c.55.1.5 61278 1sjyA 159 40.14 d.113.1.1 98900 2yvpA 182 41.70 1jl2A 156 41.99 c.55.3.1 66822 1zgzA 122 42.11 c.23.1.1 125065 3cs3A 277 42.73 1pyoA 167 43.06 c.17.1.1 95370 1spvA 184 43.08 c.50.1.2 98957 1g0sA 209 43.26 d.113.1.1 60187 2a9oA 120 43.30 c.23.1.1 126444 2yyhA 139 43.45 1ceoA 343 43.48 c.1.8.3 28808 2rdmA 132 44.29 2fmlA 273 44.73 a.4.5.68,d.113.1.6 133778,133779 2ge3A 170 45.25 d.108.1.1 135044 1qh8B 519 45.62 c.92.2.3 35634 2g3fA 421 45.99 1vk6A 269 46.31 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 4ubpC 570 46.70 b.92.1.1,c.1.9.2 28431,29053 2vhlA 396 49.04 1ghpA 258 49.16 e.3.1.1 60520 2plnA 137 49.56 1mb3A 124 51.51 c.23.1.1 78907 2fb2A 340 51.94 2pl1A 121 52.06 3cnbA 143 52.58 1rzuA 485 53.11 c.87.1.8 105140 1t2aA 375 55.08 c.2.1.2 99078 1y81A 138 56.47 c.2.1.8 122731 2qr3A 140 56.56 1lr0A 129 58.17 d.212.1.1 74213 2uytA 489 59.51 2fp3A 316 59.55 1jyeA 349 59.75 c.93.1.1 67455 1gheA 177 59.82 d.108.1.1 76222 1dbwA 126 60.27 c.23.1.1 31095 3crnA 132 60.46 1zbfA 142 60.51 c.55.3.1 124850 2id0A 644 60.56 1bupA 386 62.35 c.55.1.1,c.55.1.1 33377,33378 2yvdA 431 62.57 2z5lA 511 62.92 2nycA 144 62.99 d.37.1.1 138812 2eabA 899 63.44 1xrtA 467 64.51 b.92.1.3,c.1.9.6 122258,122259 2bw0A 329 65.84 b.46.1.1,c.65.1.1 129303,129304 1sc3A 178 66.23 c.17.1.1 105416 2i5eA 211 66.36 2cygA 312 66.77 c.1.8.3 131025 1kgsA 225 66.94 a.4.6.1,c.23.1.1 68596,68597 1mvoA 136 67.41 c.23.1.1 79513 1l3aA 228 68.65 d.18.1.2 73531 1jflA 228 71.76 c.78.2.1,c.78.2.1 71656,71657 1ne9A 335 73.02 d.108.1.4,d.108.1.4 91839,91840 2e2oA 299 73.51 2jbaA 127 75.11 1qstA 160 75.36 d.108.1.1 40804 2cntA 160 75.60 1q33A 292 75.63 d.113.1.1 95657 1epuA 591 77.00 e.25.1.1 43358 1tdzA 272 77.21 a.156.1.2,b.113.1.1,g.39.1.8 106787,106788,106789 2ehgA 149 77.30 2qxyA 142 78.84 1k82A 268 79.36 a.156.1.2,b.113.1.1,g.39.1.8 75866,75867,75868 1j53A 186 80.95 c.55.3.5 77076 1jvnA 555 81.54 c.1.2.1,c.23.16.1 67355,67356 2vqeK 129 81.79 2dkfA 431 82.72 2yx0A 342 82.87 1fjgK 129 83.03 c.55.4.1 33733 1z4rA 168 85.84 d.108.1.1 124444 1vcdA 126 86.20 d.113.1.1 119970 1hxn 219 86.44 2qytA 317 86.61 1to3A 304 87.21 c.1.10.1 107161 1wv2A 265 88.95 c.1.31.1 114910 1b00A 127 89.71 c.23.1.1 31122 1tjoA 182 89.86 a.25.1.1 112461 1vi2A 300 89.90 c.2.1.7,c.58.1.5 100726,100727 1nthA 458 89.96 c.1.25.1 80730