# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2nx8A 179 2.91e-25 2b3jA 159 5.62e-25 c.97.1.2 127787 1z3aA 168 1.45e-24 c.97.1.2 124396 1wwrA 171 4.02e-24 c.97.1.2 121366 2g84A 197 1.23e-23 c.97.1.2 134766 1wkqA 164 1.53e-23 c.97.1.2 109393 2a8nA 144 9.69e-23 c.97.1.2 126408 1p6oA 161 5.51e-21 c.97.1.2 94185 1vq2A 193 9.44e-21 c.97.1.2 114004 2b3zA 373 1.01e-20 c.71.1.2,c.97.1.2 127807,127808 2hxvA 360 5.65e-20 c.71.1.2,c.97.1.2 136859,136860 2hvwA 184 1.94e-19 1ctt 294 3.70e-15 1cttA 294 1.04e-14 c.97.1.1,c.97.1.1 36022,36023 3b8fA 142 1.33e-09 2fr5A 146 1.13e-08 c.97.1.1 133965 1uwzA 136 1.13e-07 c.97.1.1 108081 1r5tA 142 3.94e-07 c.97.1.1 104812 2z3hA 130 1.91e-06 1wn5A 130 4.02e-06 c.97.1.1 121082 2nytA 190 0.002393 2qjoA 341 0.8351 1zkjA 359 1.280 1rgyA 360 1.499 e.3.1.1 97456 1ci9A 392 1.861 e.3.1.1 64767 3ciwA 348 1.862 2ffyA 358 2.043 e.3.1.1 133394 1rgzA 363 2.268 e.3.1.1 97457 2i8tA 167 2.405 1ryaA 160 2.692 d.113.1.5 105122 1zy7A 403 3.213 1vhuA 211 3.245 c.50.1.2 100703 1yqsA 349 3.388 e.3.1.1 123899 2p3rA 510 4.166 c.55.1.4,c.55.1.4 139471,139472 1vflA 356 4.429 c.1.9.1 120041 2d4wA 504 4.467 2zf5O 497 4.830 1thfD 253 5.201 c.1.2.1 28535 2o5fA 171 6.575 2a0nA 265 6.907 c.1.2.1 125961 2pqvA 154 7.791 1bu6O 501 8.013 c.55.1.4,c.55.1.4 33499,33500 2igiA 180 9.566 2b06A 155 10.42 d.113.1.1 127624 1gkrA 458 11.19 b.92.1.3,c.1.9.6 70251,70252 1r2zA 274 11.21 a.156.1.2,b.113.1.1,g.39.1.8 96892,96893,96894 1ei5A 520 11.44 b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 2j9oA 298 11.45 2a6tA 271 11.72 a.242.1.1,d.113.1.7 126309,126310 2qjtA 352 11.83 2drwA 363 12.01 e.3.1.1 131674 1yljA 263 12.09 2oqrA 230 12.81 2b0vA 153 12.83 d.113.1.1 127650 1zbsA 291 14.78 c.55.1.5,c.55.1.5 124870,124871 2qecA 204 15.20 2q09A 416 15.23 1v8yA 170 16.11 d.113.1.1 113581 1tiqA 180 17.47 d.108.1.1 107010 1h1yA 228 18.46 c.1.2.2 76506 2eabA 899 19.26 2fkbA 180 19.57 d.113.1.2 133650 1yghA 164 20.96 d.108.1.1 40802 2ew2A 316 21.74 1huxA 270 23.21 c.55.1.5 61278 2pw9A 268 24.30 1h5yA 253 25.30 c.1.2.1 65638 2dkoA 146 25.69 1j53A 186 26.01 c.55.3.5 77076 1in4A 334 26.67 a.4.5.11,c.37.1.20 62597,62598 1qtnA 164 26.95 c.17.1.1 30999 1yioA 208 29.57 a.4.6.2,c.23.1.1 123326,123327 4ubpC 570 30.86 b.92.1.1,c.1.9.2 28431,29053 3cngA 189 32.49 2fb1A 226 33.44 a.4.5.68,d.113.1.6 133225,133226 2zayA 147 33.72 2i7vA 459 33.75 1y7rA 133 34.30 d.108.1.1 122716 2nn6B 249 34.32 1t2aA 375 34.40 c.2.1.2 99078 1ghpA 258 34.91 e.3.1.1 60520 2ewsA 287 35.31 1qkkA 155 35.76 c.23.1.1 31104 1bsgA 266 36.87 e.3.1.1 42729 1t3vA 124 37.05 c.55.5.1 112232 1zh2A 121 37.79 c.23.1.1 125069 1c1dA 355 38.94 c.2.1.7,c.58.1.1 30270,33918 1qh8B 519 39.27 c.92.2.3 35634 3c97A 140 39.70 2e2oA 299 40.09 2vhlA 396 40.28 1eyqA 222 40.31 d.36.1.1 38534 3cg4A 142 40.52 1gheA 177 40.61 d.108.1.1 76222 1epuA 591 40.80 e.25.1.1 43358 1g0sA 209 42.31 d.113.1.1 60187 2ge3A 170 42.99 d.108.1.1 135044 3cgvA 397 43.02 1spvA 184 43.58 c.50.1.2 98957 2yvdA 431 44.04 1ks9A 291 44.47 a.100.1.7,c.2.1.6 68857,68858 2ch5A 347 44.60 c.55.1.5,c.55.1.5 130453,130454 2rjnA 154 44.70 1qstA 160 44.92 d.108.1.1 40804 2qzjA 136 45.77 1hztA 190 45.89 d.113.1.2 61459 2b9eA 303 46.01 c.66.1.38 128124 1xhfA 123 46.54 c.23.1.1 122003 2gkgA 127 46.83 1rhyA 202 47.58 d.14.1.9,d.14.1.9 97491,97492 1jl1A 155 47.64 c.55.3.1 66821 1jl2A 156 48.77 c.55.3.1 66822 2ivnA 330 49.54 1pyoA 167 50.62 c.17.1.1 95370 1shuX 182 50.89 c.62.1.1 98882 1vhzA 198 51.58 d.113.1.1 100718 3cnbA 143 52.28 2i5eA 211 52.57 1l3aA 228 52.77 d.18.1.2 73531 1pvmA 184 53.45 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 2rdmA 132 53.59 1ne9A 335 55.97 d.108.1.4,d.108.1.4 91839,91840 1vk6A 269 56.30 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 3c3mA 138 58.06 1fxxA 482 58.33 c.55.3.5 33726 2fvvA 194 58.57 d.113.1.1 134226 1z4rA 168 59.21 d.108.1.1 124444 1tzyD 103 59.21 a.22.1.1 107533 1i2sA 282 59.73 e.3.1.1 71104 2odlA 373 60.52 1dcfA 136 61.09 c.23.1.2 31124 2nycA 144 61.10 d.37.1.1 138812 1tdzA 272 61.13 a.156.1.2,b.113.1.1,g.39.1.8 106787,106788,106789 2qr3A 140 61.42 1yd9A 193 61.58 c.50.1.2 122976 1zc6A 305 61.81 c.55.1.5,c.55.1.5 124888,124889 1k82A 268 62.49 a.156.1.2,b.113.1.1,g.39.1.8 75866,75867,75868 2g3fA 421 63.52 1vk9A 151 64.38 c.97.1.3 108640 2cntA 160 64.65 3cfyA 137 65.08 1u6mA 199 65.40 d.108.1.1 113069 1srrA 124 66.26 c.23.1.1 31110 2cygA 312 66.58 c.1.8.3 131025 1tjoA 182 66.98 a.25.1.1 112461 1zgzA 122 67.04 c.23.1.1 125065 2pbtA 134 68.49 1zbfA 142 68.71 c.55.3.1 124850 1tqxA 227 69.36 c.1.2.2 112614 2dx6A 159 69.81 1t3qA 168 69.90 a.56.1.1,d.15.4.2 106367,106368 1od6A 160 70.10 c.26.1.3 86836 2fp3A 316 70.57 2itmA 484 71.59 1a8sA 273 72.12 c.69.1.12 34710 2puzA 419 72.44 2z5lA 511 72.70 1pwgA 349 72.78 e.3.1.1 104340 2dkfA 431 73.34 2gokA 429 75.28 1sc3A 178 75.32 c.17.1.1 105416 1wxxA 382 75.72 b.122.1.9,c.66.1.51 121418,121419 2qytA 317 75.74 1xrtA 467 76.10 b.92.1.3,c.1.9.6 122258,122259 2a9oA 120 76.77 c.23.1.1 126444 1o12A 376 79.94 b.92.1.5,c.1.9.10 80758,80759 2uytA 489 80.29 1qopA 268 81.39 c.1.2.4 28570 1yvoA 172 82.21 d.108.1.1 124106 1lr0A 129 82.92 d.212.1.1 74213 2r8cA 426 83.04 1k2eA 156 83.34 d.113.1.1 72010 1to3A 304 83.91 c.1.10.1 107161 2ozeA 298 85.22 1tqjA 230 86.44 c.1.2.2 107228 1fjgK 129 87.08 c.55.4.1 33733 2j7vA 298 87.54 2e0nA 259 87.71 1umnA 165 87.86 a.25.1.1 99607 3cs3A 277 87.88 1wv2A 265 88.59 c.1.31.1 114910 2icsA 379 89.34 b.92.1.8,c.1.9.14 137241,137242