# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2nx8A 179 6.35e-26 2b3jA 159 1.77e-25 c.97.1.2 127787 1z3aA 168 2.80e-25 c.97.1.2 124396 1wwrA 171 1.32e-24 c.97.1.2 121366 1wkqA 164 1.73e-24 c.97.1.2 109393 2g84A 197 2.79e-24 c.97.1.2 134766 2a8nA 144 2.70e-23 c.97.1.2 126408 1p6oA 161 3.62e-21 c.97.1.2 94185 2b3zA 373 6.90e-21 c.71.1.2,c.97.1.2 127807,127808 1vq2A 193 7.43e-21 c.97.1.2 114004 2hxvA 360 3.08e-20 c.71.1.2,c.97.1.2 136859,136860 2hvwA 184 1.07e-19 1ctt 294 6.11e-15 1cttA 294 1.65e-14 c.97.1.1,c.97.1.1 36022,36023 3b8fA 142 3.61e-10 2fr5A 146 6.16e-09 c.97.1.1 133965 1uwzA 136 1.29e-07 c.97.1.1 108081 1r5tA 142 2.20e-07 c.97.1.1 104812 2z3hA 130 2.29e-06 1wn5A 130 5.50e-06 c.97.1.1 121082 2nytA 190 0.009911 2qjoA 341 0.1477 1vflA 356 0.6065 c.1.9.1 120041 2pqvA 154 0.8463 3ciwA 348 0.9065 1rgzA 363 0.9703 e.3.1.1 97457 2qjtA 352 1.154 2b0vA 153 1.171 d.113.1.1 127650 1rgyA 360 1.204 e.3.1.1 97456 1vhuA 211 1.418 c.50.1.2 100703 1zkjA 359 1.611 1ryaA 160 1.679 d.113.1.5 105122 2i8tA 167 1.696 1thfD 253 2.051 c.1.2.1 28535 1yqsA 349 2.091 e.3.1.1 123899 2ffyA 358 2.326 e.3.1.1 133394 1ci9A 392 3.087 e.3.1.1 64767 2o5fA 171 3.172 2b06A 155 3.247 d.113.1.1 127624 2dkoA 146 3.250 1qtnA 164 3.477 c.17.1.1 30999 2a0nA 265 4.149 c.1.2.1 125961 1gkrA 458 4.280 b.92.1.3,c.1.9.6 70251,70252 1pyoA 167 4.431 c.17.1.1 95370 2a6tA 271 4.547 a.242.1.1,d.113.1.7 126309,126310 1v8yA 170 5.559 d.113.1.1 113581 1to3A 304 5.884 c.1.10.1 107161 2fkbA 180 6.146 d.113.1.2 133650 2nycA 144 7.059 d.37.1.1 138812 2fb2A 340 7.065 2pw9A 268 7.902 2drwA 363 8.268 e.3.1.1 131674 2pbtA 134 8.638 1xrtA 467 9.660 b.92.1.3,c.1.9.6 122258,122259 2ef7A 133 9.677 1k2eA 156 9.813 d.113.1.1 72010 1vhzA 198 9.921 d.113.1.1 100718 1zbsA 291 9.933 c.55.1.5,c.55.1.5 124870,124871 1sc3A 178 9.97 c.17.1.1 105416 1ei5A 520 10.22 b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 2icsA 379 10.64 b.92.1.8,c.1.9.14 137241,137242 2j9oA 298 10.85 1dxeA 256 11.67 c.1.12.5 29310 1h5yA 253 12.42 c.1.2.1 65638 2qecA 204 12.73 1h1yA 228 13.50 c.1.2.2 76506 1pvmA 184 13.85 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 2nn6B 249 14.12 2o16A 160 14.42 d.37.1.1,d.37.1.1 138869,138870 3cngA 189 14.94 1yljA 263 16.34 2igiA 180 16.53 4ubpC 570 16.66 b.92.1.1,c.1.9.2 28431,29053 1o50A 157 17.51 d.37.1.1,d.37.1.1 92478,92479 2q09A 416 17.93 1nmsA 249 17.94 c.17.1.1 85879 1bsgA 266 18.10 e.3.1.1 42729 1pwgA 349 18.87 e.3.1.1 104340 2ewsA 287 19.20 2fb1A 226 19.75 a.4.5.68,d.113.1.6 133225,133226 1tqjA 230 20.58 c.1.2.2 107228 3d0rA 398 20.86 1zy7A 403 21.04 2rihA 141 21.04 1fukA 165 21.40 c.37.1.19 32409 1tiqA 180 21.41 d.108.1.1 107010 2p3rA 510 22.07 c.55.1.4,c.55.1.4 139471,139472 1spvA 184 23.14 c.50.1.2 98957 2oqrA 230 23.51 1ys7A 233 24.08 a.4.6.1,c.23.1.1 123961,123962 3cgvA 397 24.47 1hztA 190 25.09 d.113.1.2 61459 2zf5O 497 25.23 1jflA 228 25.89 c.78.2.1,c.78.2.1 71656,71657 1ex2A 189 26.43 c.51.4.2 33225 1qnaA 200 26.49 d.129.1.1,d.129.1.1 41226,41227 2fp3A 316 26.54 1aisA 182 26.67 d.129.1.1,d.129.1.1 41288,41289 1sjyA 159 27.09 d.113.1.1 98900 1qo2A 241 27.27 c.1.2.1 28533 1acfA 125 27.78 d.110.1.1 40882 1mqeA 207 27.81 d.113.1.1 91394 2ge3A 170 28.23 d.108.1.1 135044 1xbyA 216 28.49 c.1.2.3 121846 2fvvA 194 28.89 d.113.1.1 134226 1bu6O 501 30.45 c.55.1.4,c.55.1.4 33499,33500 2j7vA 298 32.11 2pbyA 308 32.27 1nthA 458 32.71 c.1.25.1 80730 2ch5A 347 32.91 c.55.1.5,c.55.1.5 130453,130454 1vzwA 244 32.97 c.1.2.1 120553 2d4wA 504 33.29 3cs3A 277 33.65 1tv8A 340 34.08 c.1.28.3 107352 2i5eA 211 34.67 1r59O 505 34.74 c.55.1.4,c.55.1.4 111697,111698 1zc6A 305 37.17 c.55.1.5,c.55.1.5 124888,124889 1gheA 177 38.00 d.108.1.1 76222 1j53A 186 38.19 c.55.3.5 77076 1xi3A 215 38.78 c.1.3.1 109601 1in4A 334 39.58 a.4.5.11,c.37.1.20 62597,62598 1t4oA 117 40.11 d.50.1.1 106425 1vk9A 151 40.35 c.97.1.3 108640 1h75A 81 40.38 c.47.1.1 60716 1huxA 270 40.72 c.55.1.5 61278 1fxxA 482 40.77 c.55.3.5 33726 1vk6A 269 41.26 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 1wcwA 261 41.41 1gx1A 160 42.61 d.79.5.1 70675 2guiA 194 42.89 c.55.3.5 135737 1t0aA 159 43.19 d.79.5.1 112192 1yghA 164 43.34 d.108.1.1 40802 1twdA 256 44.23 c.1.30.1 107397 3cumA 302 45.36 2dx6A 159 47.00 2yvdA 431 47.47 1u6mA 199 47.79 d.108.1.1 113069 1yavA 159 48.14 d.37.1.1,d.37.1.1 116595,116596 1iv3A 152 48.17 d.79.5.1 76828 2amxA 376 48.25 c.1.9.1 127024 1ghpA 258 49.15 e.3.1.1 60520 3c97A 140 49.36 2qytA 317 49.37 2ftwA 521 49.45 b.92.1.3,c.1.9.6 134083,134084 3ddjA 296 49.58 2z5lA 511 51.11 1o12A 376 51.17 b.92.1.5,c.1.9.10 80758,80759 2dc1A 236 51.36 2p1jA 186 51.99 1jvnA 555 52.87 c.1.2.1,c.23.16.1 67355,67356 2o34A 250 53.38 2gkgA 127 53.52 2e2oA 299 55.71 2ivnA 330 56.08 2p5xA 230 56.47 2uv4A 152 56.50 2bdqA 224 57.18 3c3kA 285 57.26 1g6aA 271 57.32 e.3.1.1 42704 1r2zA 274 57.57 a.156.1.2,b.113.1.1,g.39.1.8 96892,96893,96894 2q2rA 373 57.98 2fliA 220 58.37 c.1.2.2 133714 1wd7A 261 58.80 c.113.1.1 114526 2r8cA 426 59.03 2rc3A 135 59.58 1kgsA 225 59.85 a.4.6.1,c.23.1.1 68596,68597 1eyqA 222 60.10 d.36.1.1 38534 3cnbA 143 60.42 2cygA 312 60.44 c.1.8.3 131025 1q6oA 216 61.59 c.1.2.3 95986 2r14A 377 62.17 2iyaA 424 62.52 1woqA 267 62.61 c.55.1.10,c.55.1.10 109462,109463 1z4rA 168 63.63 d.108.1.1 124444 1bupA 386 63.79 c.55.1.1,c.55.1.1 33377,33378 1jl1A 155 64.50 c.55.3.1 66821 2dkfA 431 64.60 1mp9A 198 65.21 d.129.1.1,d.129.1.1 91385,91386 1zczA 464 66.60 c.24.1.3,c.97.1.4 124923,124924 2ehgA 149 67.09 2fvkA 559 67.16 b.92.1.3,c.1.9.6 134204,134205 1kcxA 518 68.65 b.92.1.3,c.1.9.6 90953,90954 2hjvA 163 69.19 2b9eA 303 69.35 c.66.1.38 128124 1zh2A 121 69.82 c.23.1.1 125069 2p6pA 384 71.89 3cfyA 137 71.97 2uwxA 494 73.18 e.3.1.1 140002 1gkpA 458 73.62 b.92.1.3,c.1.9.6 70231,70232 1mk4A 157 73.83 d.108.1.1 84979 1rrmA 386 74.09 e.22.1.2 105081 1c1dA 355 74.22 c.2.1.7,c.58.1.1 30270,33918 1vcdA 126 74.22 d.113.1.1 119970 1mr7A 209 74.31 b.81.1.3 91430 1yioA 208 74.49 a.4.6.2,c.23.1.1 123326,123327 2je6B 250 75.07 1zbfA 142 77.42 c.55.3.1 124850 1k20A 310 78.78 c.107.1.1 68027 1v97A 1332 79.62 a.56.1.1,d.15.4.2,d.41.1.1,d.87.2.1,d.133.1.1,d.145.1.3 108436,108437,108438,108439,108440,108441 2uzhA 165 79.88 1xr4A 509 80.16 c.124.1.2,c.124.1.2 115860,115861 2yyhA 139 81.70 1qstA 160 81.91 d.108.1.1 40804 2rdmA 132 82.00 2a9oA 120 82.34 c.23.1.1 126444 2pgfA 371 82.59 1xhfA 123 82.61 c.23.1.1 122003 2vhlA 396 82.99 1qkkA 155 84.57 c.23.1.1 31104 1rrvA 416 84.96 c.87.1.5 105083 1i2sA 282 86.77 e.3.1.1 71104 3cg4A 142 86.77 1y9wA 140 86.81 d.108.1.1 122783 1yr0A 175 86.92 d.108.1.1 123905 1wa3A 205 86.94 c.1.10.1 120802 1wxxA 382 87.83 b.122.1.9,c.66.1.51 121418,121419 1vqoT 120 88.60 b.34.5.1 120381 1zgzA 122 89.24 c.23.1.1 125065