# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2nx8A 179 3.09e-27 2b3jA 159 8.94e-27 c.97.1.2 127787 1z3aA 168 1.23e-26 c.97.1.2 124396 1wkqA 164 6.84e-26 c.97.1.2 109393 1wwrA 171 6.87e-26 c.97.1.2 121366 2g84A 197 7.99e-26 c.97.1.2 134766 2a8nA 144 8.10e-25 c.97.1.2 126408 1vq2A 193 6.04e-23 c.97.1.2 114004 1p6oA 161 7.33e-23 c.97.1.2 94185 2b3zA 373 3.28e-22 c.71.1.2,c.97.1.2 127807,127808 2hxvA 360 7.97e-22 c.71.1.2,c.97.1.2 136859,136860 2hvwA 184 1.35e-21 1ctt 294 6.23e-17 1cttA 294 6.74e-17 c.97.1.1,c.97.1.1 36022,36023 3b8fA 142 5.56e-11 2fr5A 146 9.05e-10 c.97.1.1 133965 1uwzA 136 6.16e-09 c.97.1.1 108081 1r5tA 142 1.49e-08 c.97.1.1 104812 2z3hA 130 1.01e-07 1wn5A 130 1.86e-07 c.97.1.1 121082 2nytA 190 0.001517 2qjoA 341 0.1077 1vflA 356 0.1859 c.1.9.1 120041 1vhuA 211 0.8792 c.50.1.2 100703 2pqvA 154 0.9408 2i8tA 167 1.120 2qjtA 352 1.206 2o5fA 171 1.245 1yqsA 349 1.940 e.3.1.1 123899 1ryaA 160 2.195 d.113.1.5 105122 2ffyA 358 2.402 e.3.1.1 133394 1rgyA 360 2.519 e.3.1.1 97456 2b0vA 153 2.576 d.113.1.1 127650 1rgzA 363 2.671 e.3.1.1 97457 1ci9A 392 2.694 e.3.1.1 64767 3cngA 189 2.981 2a6tA 271 3.465 a.242.1.1,d.113.1.7 126309,126310 1zkjA 359 3.486 1v8yA 170 3.655 d.113.1.1 113581 3cgvA 397 3.656 2qecA 204 3.971 2b06A 155 4.315 d.113.1.1 127624 1in4A 334 4.550 a.4.5.11,c.37.1.20 62597,62598 3ciwA 348 4.589 1vk6A 269 6.374 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 2fkbA 180 6.536 d.113.1.2 133650 2j9oA 298 8.103 2ewsA 287 8.161 1jl1A 155 8.218 c.55.3.1 66821 1ei5A 520 8.243 b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 2d4wA 504 10.08 2igiA 180 10.25 1vhzA 198 10.90 d.113.1.1 100718 2fvvA 194 10.93 d.113.1.1 134226 1yljA 263 11.09 2zf5O 497 11.26 2fb1A 226 11.92 a.4.5.68,d.113.1.6 133225,133226 2pbtA 134 12.52 2dkoA 146 13.10 2oqrA 230 13.21 1j53A 186 14.53 c.55.3.5 77076 2p3rA 510 14.79 c.55.1.4,c.55.1.4 139471,139472 1fxxA 482 15.58 c.55.3.5 33726 2ew2A 316 15.87 1jl2A 156 16.21 c.55.3.1 66822 1k2eA 156 16.63 d.113.1.1 72010 2drwA 363 16.71 e.3.1.1 131674 1thfD 253 16.90 c.1.2.1 28535 1zy7A 403 18.39 2icsA 379 18.40 b.92.1.8,c.1.9.14 137241,137242 1sjyA 159 18.97 d.113.1.1 98900 1qtnA 164 19.79 c.17.1.1 30999 1r2zA 274 20.13 a.156.1.2,b.113.1.1,g.39.1.8 96892,96893,96894 2id0A 644 20.28 2ch5A 347 21.72 c.55.1.5,c.55.1.5 130453,130454 3cg4A 142 22.18 1pyoA 167 22.61 c.17.1.1 95370 2yyhA 139 23.01 1mqeA 207 23.24 d.113.1.1 91394 1ys7A 233 23.46 a.4.6.1,c.23.1.1 123961,123962 2e2oA 299 23.83 2q09A 416 24.86 1t3qA 168 24.94 a.56.1.1,d.15.4.2 106367,106368 2yvdA 431 25.62 1pwgA 349 26.37 e.3.1.1 104340 2dkfA 431 26.40 3cumA 302 26.78 1tiqA 180 26.89 d.108.1.1 107010 1dxeA 256 27.40 c.1.12.5 29310 1g0sA 209 28.98 d.113.1.1 60187 1hztA 190 29.92 d.113.1.2 61459 1gkrA 458 29.92 b.92.1.3,c.1.9.6 70251,70252 2zayA 147 32.33 3cnbA 143 32.33 2pw9A 268 32.95 2i7vA 459 33.08 1y7rA 133 33.12 d.108.1.1 122716 2eabA 899 33.33 2rdmA 132 34.09 1xrtA 467 34.77 b.92.1.3,c.1.9.6 122258,122259 2guiA 194 35.37 c.55.3.5 135737 1gkpA 458 35.92 b.92.1.3,c.1.9.6 70231,70232 1qkkA 155 36.01 c.23.1.1 31104 1yghA 164 36.28 d.108.1.1 40802 2nycA 144 36.72 d.37.1.1 138812 2o16A 160 36.77 d.37.1.1,d.37.1.1 138869,138870 3c97A 140 37.00 1eyqA 222 37.41 d.36.1.1 38534 1zh2A 121 38.64 c.23.1.1 125069 1l3aA 228 38.74 d.18.1.2 73531 1yioA 208 38.86 a.4.6.2,c.23.1.1 123326,123327 1bu6O 501 39.07 c.55.1.4,c.55.1.4 33499,33500 174lA 164 39.37 d.2.1.3 36956 1u6mA 199 40.52 d.108.1.1 113069 1ks9A 291 41.45 a.100.1.7,c.2.1.6 68857,68858 3cfyA 137 42.05 1xkrA 206 42.77 d.252.1.1 115421 2qzjA 136 43.30 1t4oA 117 43.83 d.50.1.1 106425 2a0nA 265 43.86 c.1.2.1 125961 4ubpC 570 45.08 b.92.1.1,c.1.9.2 28431,29053 1xhfA 123 45.34 c.23.1.1 122003 2rjnA 154 45.46 1zbsA 291 45.91 c.55.1.5,c.55.1.5 124870,124871 2ef7A 133 46.25 1rm6C 161 46.40 a.56.1.1,d.15.4.2 111876,111877 3c3mA 138 47.27 2fb2A 340 48.26 1dcfA 136 48.51 c.23.1.2 31124 2j7vA 298 50.07 2p1jA 186 50.71 1k82A 268 50.76 a.156.1.2,b.113.1.1,g.39.1.8 75866,75867,75868 2g3fA 421 50.97 2eo5A 419 51.39 2ge3A 170 51.46 d.108.1.1 135044 1tjoA 182 55.19 a.25.1.1 112461 3bk2A 562 56.39 2a9oA 120 57.42 c.23.1.1 126444 1ytaA 180 57.80 c.55.3.5 124002 1srrA 124 58.14 c.23.1.1 31110 2fp3A 316 58.82 1tjyA 316 59.21 c.93.1.1 107062 1aisA 182 59.64 d.129.1.1,d.129.1.1 41288,41289 2ehgA 149 59.68 1zgzA 122 60.46 c.23.1.1 125065 1zbfA 142 60.76 c.55.3.1 124850 1zc6A 305 60.94 c.55.1.5,c.55.1.5 124888,124889 1g2rA 100 61.15 d.192.1.1 60231 2plnA 137 61.81 1vcdA 126 62.68 d.113.1.1 119970 1xviA 275 63.22 c.108.1.10 116088 1wxxA 382 63.73 b.122.1.9,c.66.1.51 121418,121419 1mvoA 136 63.95 c.23.1.1 79513 1hrhA 136 65.33 c.55.3.1 33577 1lstA 239 65.68 c.94.1.1 35755 1mr7A 209 67.67 b.81.1.3 91430 1rhyA 202 68.99 d.14.1.9,d.14.1.9 97491,97492 2vhlA 396 69.20 1qh8B 519 69.37 c.92.2.3 35634 1tkeA 224 69.54 d.15.10.1,d.67.1.1 112470,112471 1gheA 177 70.31 d.108.1.1 76222 2e7pA 116 70.81 1sznA 417 72.01 b.71.1.1,c.1.8.1 106162,106163 1o50A 157 72.49 d.37.1.1,d.37.1.1 92478,92479 2qr3A 140 74.33 2gkgA 127 74.35 1spvA 184 75.35 c.50.1.2 98957 2rihA 141 75.42 1wd7A 261 77.10 c.113.1.1 114526 1sc3A 178 77.12 c.17.1.1 105416 1ghpA 258 77.24 e.3.1.1 60520 1mb3A 124 77.54 c.23.1.1 78907 1umnA 165 79.03 a.25.1.1 99607 2o34A 250 79.13 1dbwA 126 79.29 c.23.1.1 31095 1lk9A 448 80.64 c.67.1.1 78057 2o1cA 150 82.25 2b78A 385 82.71 b.122.1.9,c.66.1.51 128025,128026 1rk6A 496 82.94 b.92.1.6,b.92.1.6,c.1.9.11 97599,97600,97601 2cntA 160 83.30 1acfA 125 84.15 d.110.1.1 40882 2itmA 484 84.40 2qytA 317 85.86 1h4rA 314 86.18 a.11.2.1,b.55.1.5,d.15.1.4 65616,65617,65618 1kgsA 225 86.38 a.4.6.1,c.23.1.1 68596,68597 1zxxA 319 87.33 2pt7A 330 88.43 2bi0A 337 88.75 d.38.1.4,d.38.1.4 128565,128566 1w0hA 204 89.17 c.55.3.5 114064 1od6A 160 89.20 c.26.1.3 86836 1pvgA 418 89.85 d.14.1.3,d.122.1.2 95161,95162