# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2nx8A 179 5.53e-27 2b3jA 159 1.57e-26 c.97.1.2 127787 1z3aA 168 2.28e-26 c.97.1.2 124396 1wwrA 171 1.21e-25 c.97.1.2 121366 2g84A 197 1.37e-25 c.97.1.2 134766 1wkqA 164 1.60e-25 c.97.1.2 109393 2a8nA 144 1.78e-24 c.97.1.2 126408 1p6oA 161 9.89e-23 c.97.1.2 94185 1vq2A 193 1.62e-22 c.97.1.2 114004 2b3zA 373 6.29e-22 c.71.1.2,c.97.1.2 127807,127808 2hxvA 360 1.49e-21 c.71.1.2,c.97.1.2 136859,136860 2hvwA 184 4.25e-21 1ctt 294 2.63e-16 1cttA 294 3.21e-16 c.97.1.1,c.97.1.1 36022,36023 3b8fA 142 1.93e-10 2fr5A 146 3.90e-09 c.97.1.1 133965 1uwzA 136 2.69e-08 c.97.1.1 108081 1r5tA 142 7.86e-08 c.97.1.1 104812 2z3hA 130 3.63e-07 1wn5A 130 6.48e-07 c.97.1.1 121082 2nytA 190 0.001587 1vflA 356 0.1710 c.1.9.1 120041 2qjoA 341 0.2584 1vhuA 211 0.4697 c.50.1.2 100703 2i8tA 167 1.269 2pqvA 154 1.891 1ryaA 160 2.179 d.113.1.5 105122 2o5fA 171 2.305 2qjtA 352 2.832 3cgvA 397 3.183 1in4A 334 3.597 a.4.5.11,c.37.1.20 62597,62598 1yqsA 349 3.706 e.3.1.1 123899 2a6tA 271 3.816 a.242.1.1,d.113.1.7 126309,126310 1ci9A 392 3.818 e.3.1.1 64767 1rgyA 360 4.307 e.3.1.1 97456 2b0vA 153 4.366 d.113.1.1 127650 2ffyA 358 4.418 e.3.1.1 133394 2b06A 155 4.519 d.113.1.1 127624 3ciwA 348 4.910 2qecA 204 6.069 1rgzA 363 6.148 e.3.1.1 97457 1zkjA 359 7.372 2fvvA 194 7.689 d.113.1.1 134226 1v8yA 170 7.905 d.113.1.1 113581 3cngA 189 8.548 2d4wA 504 9.112 2fkbA 180 10.09 d.113.1.2 133650 2oqrA 230 10.67 2zf5O 497 11.63 2fb1A 226 13.65 a.4.5.68,d.113.1.6 133225,133226 2igiA 180 13.72 2j9oA 298 13.78 1jl1A 155 14.62 c.55.3.1 66821 1thfD 253 14.69 c.1.2.1 28535 2p3rA 510 15.27 c.55.1.4,c.55.1.4 139471,139472 2dkoA 146 15.41 2icsA 379 16.37 b.92.1.8,c.1.9.14 137241,137242 1vk6A 269 16.71 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 1ys7A 233 16.77 a.4.6.1,c.23.1.1 123961,123962 3cumA 302 17.25 2ewsA 287 17.36 1fxxA 482 18.28 c.55.3.5 33726 3cg4A 142 18.86 1yljA 263 18.93 1ei5A 520 20.03 b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 1zy7A 403 20.40 2eabA 899 20.44 1jl2A 156 21.71 c.55.3.1 66822 1vhzA 198 22.47 d.113.1.1 100718 1j53A 186 22.54 c.55.3.5 77076 1l3aA 228 23.14 d.18.1.2 73531 2ch5A 347 23.41 c.55.1.5,c.55.1.5 130453,130454 1gkrA 458 25.02 b.92.1.3,c.1.9.6 70251,70252 3c97A 140 25.05 1r2zA 274 25.44 a.156.1.2,b.113.1.1,g.39.1.8 96892,96893,96894 1tiqA 180 25.72 d.108.1.1 107010 1pyoA 167 25.84 c.17.1.1 95370 1sjyA 159 26.19 d.113.1.1 98900 1qtnA 164 26.26 c.17.1.1 30999 2pbtA 134 26.73 1k2eA 156 27.50 d.113.1.1 72010 2ew2A 316 27.77 2id0A 644 27.94 1dxeA 256 28.10 c.1.12.5 29310 2zayA 147 28.76 2drwA 363 29.02 e.3.1.1 131674 1qkkA 155 29.53 c.23.1.1 31104 2rdmA 132 29.84 2qzjA 136 30.28 3cnbA 143 30.66 1mqeA 207 30.67 d.113.1.1 91394 1t3qA 168 31.21 a.56.1.1,d.15.4.2 106367,106368 1zh2A 121 32.26 c.23.1.1 125069 1spvA 184 33.47 c.50.1.2 98957 2q09A 416 33.83 2yvdA 431 34.02 2a0nA 265 34.37 c.1.2.1 125961 1gkpA 458 34.39 b.92.1.3,c.1.9.6 70231,70232 3cfyA 137 34.52 2yyhA 139 34.59 2rjnA 154 36.41 1y7rA 133 37.48 d.108.1.1 122716 2dkfA 431 37.55 1yioA 208 37.87 a.4.6.2,c.23.1.1 123326,123327 1yghA 164 38.21 d.108.1.1 40802 3c3mA 138 38.42 2e2oA 299 39.22 2i7vA 459 39.29 1eyqA 222 40.00 d.36.1.1 38534 1xhfA 123 41.14 c.23.1.1 122003 3d0rA 398 41.90 1dcfA 136 43.18 c.23.1.2 31124 2fb2A 340 44.18 1tjoA 182 45.93 a.25.1.1 112461 1hztA 190 47.19 d.113.1.2 61459 1zgzA 122 47.53 c.23.1.1 125065 1tjyA 316 47.81 c.93.1.1 107062 1ks9A 291 48.02 a.100.1.7,c.2.1.6 68857,68858 1zbsA 291 49.36 c.55.1.5,c.55.1.5 124870,124871 1srrA 124 49.53 c.23.1.1 31110 1qh8B 519 50.32 c.92.2.3 35634 2a9oA 120 50.34 c.23.1.1 126444 2o16A 160 50.34 d.37.1.1,d.37.1.1 138869,138870 1mvoA 136 50.50 c.23.1.1 79513 4ubpC 570 51.45 b.92.1.1,c.1.9.2 28431,29053 1zbfA 142 52.00 c.55.3.1 124850 1xrtA 467 52.25 b.92.1.3,c.1.9.6 122258,122259 1rm6C 161 52.29 a.56.1.1,d.15.4.2 111876,111877 174lA 164 52.78 d.2.1.3 36956 1xkrA 206 53.40 d.252.1.1 115421 1t4oA 117 53.59 d.50.1.1 106425 1xviA 275 54.40 c.108.1.10 116088 1yd9A 193 55.21 c.50.1.2 122976 1kgsA 225 55.63 a.4.6.1,c.23.1.1 68596,68597 3bk2A 562 56.15 2ge3A 170 57.36 d.108.1.1 135044 2nycA 144 58.10 d.37.1.1 138812 1y9wA 140 58.39 d.108.1.1 122783 1od6A 160 58.53 c.26.1.3 86836 1q33A 292 61.52 d.113.1.1 95657 2guiA 194 61.88 c.55.3.5 135737 2yx0A 342 62.40 1auoA 218 62.57 c.69.1.14 34716 1lk9A 448 63.02 c.67.1.1 78057 1pwgA 349 63.05 e.3.1.1 104340 2ef7A 133 65.34 1umnA 165 66.74 a.25.1.1 99607 2dx6A 159 67.24 2qr3A 140 68.09 2rihA 141 69.27 1g0sA 209 69.47 d.113.1.1 60187 1bu6O 501 70.25 c.55.1.4,c.55.1.4 33499,33500 2eo5A 419 71.06 1dbwA 126 71.43 c.23.1.1 31095 1ghpA 258 72.42 e.3.1.1 60520 1gheA 177 72.64 d.108.1.1 76222 1mb3A 124 72.95 c.23.1.1 78907 1zc6A 305 73.78 c.55.1.5,c.55.1.5 124888,124889 2fp3A 316 74.18 2j7vA 298 74.35 2plnA 137 74.76 1vcdA 126 74.78 d.113.1.1 119970 3crnA 132 77.11 2g3fA 421 77.87 1v97A 1332 79.32 a.56.1.1,d.15.4.2,d.41.1.1,d.87.2.1,d.133.1.1,d.145.1.3 108436,108437,108438,108439,108440,108441 2pt7A 330 80.24 2gkgA 127 80.26 2pl1A 121 80.72 1w0hA 204 80.79 c.55.3.5 114064 2e7pA 116 81.75 2pw9A 268 82.15 2itmA 484 82.75 1drw 273 83.44 1wd7A 261 84.38 c.113.1.1 114526 1zxxA 319 84.65 1ytaA 180 85.27 c.55.3.5 124002 2vhlA 396 85.46 1i12A 160 85.66 d.108.1.1 61515 2vlbA 251 86.58 1u6mA 199 86.65 d.108.1.1 113069 2uytA 489 87.52 1mr7A 209 88.43 b.81.1.3 91430 1epuA 591 89.30 e.25.1.1 43358 1qstA 160 89.31 d.108.1.1 40804