# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2nx8A 179 3.45e-27 2b3jA 159 7.87e-27 c.97.1.2 127787 1z3aA 168 1.36e-26 c.97.1.2 124396 2g84A 197 6.46e-26 c.97.1.2 134766 1wwrA 171 7.00e-26 c.97.1.2 121366 1wkqA 164 8.53e-26 c.97.1.2 109393 2a8nA 144 1.26e-24 c.97.1.2 126408 1vq2A 193 6.19e-23 c.97.1.2 114004 1p6oA 161 6.49e-23 c.97.1.2 94185 2b3zA 373 2.31e-22 c.71.1.2,c.97.1.2 127807,127808 2hxvA 360 5.34e-22 c.71.1.2,c.97.1.2 136859,136860 2hvwA 184 1.72e-21 1ctt 294 1.24e-16 1cttA 294 1.50e-16 c.97.1.1,c.97.1.1 36022,36023 3b8fA 142 1.11e-10 2fr5A 146 1.99e-09 c.97.1.1 133965 1uwzA 136 1.59e-08 c.97.1.1 108081 1r5tA 142 3.93e-08 c.97.1.1 104812 2z3hA 130 1.69e-07 1wn5A 130 3.48e-07 c.97.1.1 121082 2nytA 190 0.001557 2qjoA 341 0.1402 1vflA 356 0.3397 c.1.9.1 120041 1vhuA 211 0.4089 c.50.1.2 100703 2i8tA 167 0.997 2pqvA 154 1.562 1ryaA 160 1.648 d.113.1.5 105122 2qjtA 352 1.709 2o5fA 171 1.742 1in4A 334 2.774 a.4.5.11,c.37.1.20 62597,62598 2a6tA 271 2.917 a.242.1.1,d.113.1.7 126309,126310 2b06A 155 3.283 d.113.1.1 127624 2b0vA 153 3.592 d.113.1.1 127650 3cgvA 397 3.658 1yqsA 349 4.097 e.3.1.1 123899 3ciwA 348 5.143 1ci9A 392 5.339 e.3.1.1 64767 2ffyA 358 5.414 e.3.1.1 133394 1rgyA 360 5.753 e.3.1.1 97456 3cngA 189 5.964 1rgzA 363 6.168 e.3.1.1 97457 2fvvA 194 6.207 d.113.1.1 134226 2fkbA 180 7.489 d.113.1.2 133650 1v8yA 170 7.551 d.113.1.1 113581 1zkjA 359 8.814 2fb1A 226 8.915 a.4.5.68,d.113.1.6 133225,133226 1jl1A 155 9.377 c.55.3.1 66821 2oqrA 230 9.671 2zf5O 497 9.722 2d4wA 504 9.904 2j9oA 298 10.56 1vk6A 269 11.17 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 2qecA 204 12.09 2igiA 180 12.93 2ewsA 287 13.11 1jl2A 156 13.64 c.55.3.1 66822 3cg4A 142 14.46 1ys7A 233 14.66 a.4.6.1,c.23.1.1 123961,123962 1yljA 263 14.91 2eabA 899 15.52 1ei5A 520 15.61 b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 1thfD 253 16.72 c.1.2.1 28535 3cumA 302 17.01 2dkoA 146 17.94 2pbtA 134 18.21 1dxeA 256 18.77 c.1.12.5 29310 1qkkA 155 18.97 c.23.1.1 31104 2p3rA 510 19.02 c.55.1.4,c.55.1.4 139471,139472 3c97A 140 20.01 3cnbA 143 20.51 1vhzA 198 20.84 d.113.1.1 100718 1fxxA 482 21.14 c.55.3.5 33726 2yyhA 139 22.00 2rdmA 132 22.07 1r2zA 274 22.12 a.156.1.2,b.113.1.1,g.39.1.8 96892,96893,96894 1sjyA 159 23.13 d.113.1.1 98900 2qzjA 136 23.54 1k2eA 156 23.77 d.113.1.1 72010 1yioA 208 24.73 a.4.6.2,c.23.1.1 123326,123327 1j53A 186 25.24 c.55.3.5 77076 2icsA 379 25.67 b.92.1.8,c.1.9.14 137241,137242 2zayA 147 25.79 1zh2A 121 26.22 c.23.1.1 125069 1mqeA 207 27.34 d.113.1.1 91394 2rjnA 154 28.18 2ew2A 316 28.36 3c3mA 138 28.55 1t3qA 168 29.02 a.56.1.1,d.15.4.2 106367,106368 1l3aA 228 29.33 d.18.1.2 73531 1qtnA 164 30.26 c.17.1.1 30999 1dcfA 136 30.42 c.23.1.2 31124 2id0A 644 30.96 1pyoA 167 31.60 c.17.1.1 95370 2ch5A 347 32.52 c.55.1.5,c.55.1.5 130453,130454 2eo5A 419 32.78 1zy7A 403 32.88 4ubpC 570 34.48 b.92.1.1,c.1.9.2 28431,29053 2drwA 363 35.15 e.3.1.1 131674 1xhfA 123 35.17 c.23.1.1 122003 1gkpA 458 35.32 b.92.1.3,c.1.9.6 70231,70232 2e2oA 299 36.44 1zgzA 122 37.20 c.23.1.1 125065 1srrA 124 38.15 c.23.1.1 31110 2a0nA 265 38.54 c.1.2.1 125961 2q09A 416 39.00 1hztA 190 39.19 d.113.1.2 61459 1eyqA 222 39.36 d.36.1.1 38534 1spvA 184 39.65 c.50.1.2 98957 1tiqA 180 39.88 d.108.1.1 107010 1kgsA 225 40.31 a.4.6.1,c.23.1.1 68596,68597 3cfyA 137 40.74 1zbfA 142 40.98 c.55.3.1 124850 1zbsA 291 42.12 c.55.1.5,c.55.1.5 124870,124871 2j7vA 298 42.91 1mvoA 136 43.84 c.23.1.1 79513 2a9oA 120 44.18 c.23.1.1 126444 2o16A 160 46.49 d.37.1.1,d.37.1.1 138869,138870 1g0sA 209 47.11 d.113.1.1 60187 1yd9A 193 47.19 c.50.1.2 122976 1y7rA 133 47.54 d.108.1.1 122716 2dkfA 431 48.73 2yvdA 431 49.38 2fb2A 340 49.81 2i7vA 459 49.99 2plnA 137 50.05 1ks9A 291 50.68 a.100.1.7,c.2.1.6 68857,68858 1yghA 164 50.78 d.108.1.1 40802 1gkrA 458 50.78 b.92.1.3,c.1.9.6 70251,70252 174lA 164 51.86 d.2.1.3 36956 1qh8B 519 52.02 c.92.2.3 35634 2nycA 144 52.24 d.37.1.1 138812 2bs9A 503 52.31 b.71.1.2,c.1.8.3 129062,129063 2qr3A 140 52.86 1z7gA 217 53.32 c.61.1.1 124624 1t4oA 117 53.76 d.50.1.1 106425 1tjyA 316 53.86 c.93.1.1 107062 1mb3A 124 54.52 c.23.1.1 78907 1mr7A 209 55.16 b.81.1.3 91430 1xrtA 467 56.30 b.92.1.3,c.1.9.6 122258,122259 1v97A 1332 58.39 a.56.1.1,d.15.4.2,d.41.1.1,d.87.2.1,d.133.1.1,d.145.1.3 108436,108437,108438,108439,108440,108441 1lk9A 448 58.82 c.67.1.1 78057 3d0rA 398 59.35 1rm6C 161 59.69 a.56.1.1,d.15.4.2 111876,111877 1tjoA 182 59.93 a.25.1.1 112461 2gkgA 127 60.18 1hrhA 136 60.58 c.55.3.1 33577 3crnA 132 61.71 1dbwA 126 62.20 c.23.1.1 31095 1shuX 182 64.77 c.62.1.1 98882 2e7pA 116 64.84 2ge3A 170 65.17 d.108.1.1 135044 2guiA 194 68.50 c.55.3.5 135737 1pwgA 349 69.19 e.3.1.1 104340 2ehgA 149 70.87 1xviA 275 71.24 c.108.1.10 116088 2i5eA 211 71.92 1ytaA 180 72.43 c.55.3.5 124002 1bu6O 501 72.57 c.55.1.4,c.55.1.4 33499,33500 1xkrA 206 73.00 d.252.1.1 115421 2b9eA 303 73.15 c.66.1.38 128124 2ef7A 133 73.95 1od6A 160 73.99 c.26.1.3 86836 2pl1A 121 74.37 1aisA 182 75.62 d.129.1.1,d.129.1.1 41288,41289 1vcdA 126 75.81 d.113.1.1 119970 1zc6A 305 76.02 c.55.1.5,c.55.1.5 124888,124889 2g3fA 421 76.27 2cntA 160 76.42 2rihA 141 76.64 1h75A 81 77.09 c.47.1.1 60716 1auoA 218 77.24 c.69.1.14 34716 1a04A 215 77.36 a.4.6.2,c.23.1.1 16234,31089 1q33A 292 78.07 d.113.1.1 95657 2yx0A 342 78.61 3bk2A 562 78.62 1y9wA 140 79.45 d.108.1.1 122783 1wd7A 261 82.80 c.113.1.1 114526 2fmlA 273 83.42 a.4.5.68,d.113.1.6 133778,133779 2o1cA 150 84.92 2vlbA 251 86.29 1sznA 417 86.88 b.71.1.1,c.1.8.1 106162,106163 1w0hA 204 86.91 c.55.3.5 114064 1pvgA 418 88.29 d.14.1.3,d.122.1.2 95161,95162 2vhlA 396 88.72 1iv3A 152 89.34 d.79.5.1 76828