# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2nx8A 179 2.60e-28 2b3jA 159 3.56e-28 c.97.1.2 127787 1z3aA 168 3.34e-27 c.97.1.2 124396 1wwrA 171 3.77e-26 c.97.1.2 121366 2g84A 197 3.92e-26 c.97.1.2 134766 1wkqA 164 1.08e-25 c.97.1.2 109393 2a8nA 144 1.30e-24 c.97.1.2 126408 1p6oA 161 2.90e-23 c.97.1.2 94185 2b3zA 373 1.16e-22 c.71.1.2,c.97.1.2 127807,127808 1vq2A 193 2.41e-22 c.97.1.2 114004 2hxvA 360 4.66e-22 c.71.1.2,c.97.1.2 136859,136860 2hvwA 184 5.50e-21 1ctt 294 1.98e-14 1cttA 294 7.83e-14 c.97.1.1,c.97.1.1 36022,36023 3b8fA 142 1.66e-10 2fr5A 146 9.84e-10 c.97.1.1 133965 1uwzA 136 2.47e-09 c.97.1.1 108081 1r5tA 142 1.55e-08 c.97.1.1 104812 2z3hA 130 1.80e-07 1wn5A 130 8.60e-07 c.97.1.1 121082 2nytA 190 0.002768 2qjoA 341 1.278 1vhuA 211 2.453 c.50.1.2 100703 1qtnA 164 2.497 c.17.1.1 30999 1zkjA 359 2.916 1rgyA 360 3.147 e.3.1.1 97456 2ffyA 358 3.751 e.3.1.1 133394 2dkoA 146 4.232 1rgzA 363 4.319 e.3.1.1 97457 1sc3A 178 4.692 c.17.1.1 105416 1pyoA 167 5.345 c.17.1.1 95370 1a8sA 273 6.263 c.69.1.12 34710 1ci9A 392 7.728 e.3.1.1 64767 1xhfA 123 9.276 c.23.1.1 122003 2vlbA 251 9.402 1nmsA 249 10.11 c.17.1.1 85879 1mqeA 207 10.57 d.113.1.1 91394 1iirA 415 11.72 c.87.1.5 62453 1lk9A 448 12.79 c.67.1.1 78057 1ys7A 233 12.83 a.4.6.1,c.23.1.1 123961,123962 2oqrA 230 13.91 1ryaA 160 13.92 d.113.1.5 105122 1in4A 334 14.25 a.4.5.11,c.37.1.20 62597,62598 1uehA 253 14.44 c.101.1.1 99259 1h05A 146 14.82 c.23.13.1 76433 1zy7A 403 14.91 2o5fA 171 15.07 1dxeA 256 15.59 c.1.12.5 29310 1zh2A 121 17.04 c.23.1.1 125069 2hb5A 164 18.12 1b00A 127 20.20 c.23.1.1 31122 1zgzA 122 20.49 c.23.1.1 125065 167lA 164 20.77 d.2.1.3 36937 2b06A 155 20.79 d.113.1.1 127624 1x7yA 400 21.63 c.36.1.11 114944 2i8tA 167 21.84 1ei5A 520 22.54 b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 2b0vA 153 22.73 d.113.1.1 127650 2ewsA 287 23.26 1mb3A 124 23.45 c.23.1.1 78907 1yqsA 349 23.68 e.3.1.1 123899 1v8yA 170 23.70 d.113.1.1 113581 1ituA 369 23.79 c.1.9.7 71423 2jbaA 127 24.40 3cg4A 142 24.58 1spvA 184 25.41 c.50.1.2 98957 1srrA 124 26.08 c.23.1.1 31110 2a9oA 120 26.54 c.23.1.1 126444 2igiA 180 27.58 2rdmA 132 30.20 2b9eA 303 30.78 c.66.1.38 128124 1g0sA 209 30.95 d.113.1.1 60187 2qzjA 136 31.86 1qkkA 155 32.43 c.23.1.1 31104 3c97A 140 33.54 2cxxA 190 33.93 c.37.1.8 131013 1vhzA 198 34.26 d.113.1.1 100718 2pl1A 121 34.67 1yd9A 193 34.72 c.50.1.2 122976 174lA 164 34.80 d.2.1.3 36956 3cfyA 137 35.00 1r2zA 274 35.43 a.156.1.2,b.113.1.1,g.39.1.8 96892,96893,96894 2pqvA 154 35.46 2drwA 363 35.57 e.3.1.1 131674 1tzyD 103 36.32 a.22.1.1 107533 2g76A 335 36.44 2rgyA 290 36.78 2ehgA 149 36.87 2a6tA 271 37.36 a.242.1.1,d.113.1.7 126309,126310 1jyeA 349 37.63 c.93.1.1 67455 1kgsA 225 37.98 a.4.6.1,c.23.1.1 68596,68597 2qjtA 352 38.59 2ivnA 330 38.84 2i7vA 459 38.92 1k2eA 156 38.92 d.113.1.1 72010 2bw0A 329 39.51 b.46.1.1,c.65.1.1 129303,129304 176lA 164 39.55 d.2.1.3 36942 2qxyA 142 39.78 2o0aA 298 40.19 1t4oA 117 41.12 d.50.1.1 106425 1dcfA 136 41.31 c.23.1.2 31124 2zmvA 227 41.45 3ce9A 354 41.70 1wd7A 261 42.35 c.113.1.1 114526 1zbfA 142 42.78 c.55.3.1 124850 2ch5A 347 43.96 c.55.1.5,c.55.1.5 130453,130454 1dbwA 126 44.22 c.23.1.1 31095 3c3mA 138 44.26 2d4wA 504 44.57 2plnA 137 46.13 1mvoA 136 46.80 c.23.1.1 79513 1fukA 165 47.26 c.37.1.19 32409 2cygA 312 48.02 c.1.8.3 131025 1vicA 262 48.50 c.68.1.13 100756 3cs3A 277 49.43 3cumA 302 49.93 3cngA 189 50.42 3crnA 132 51.94 1t5iA 172 52.01 c.37.1.19 106450 3ciwA 348 53.89 2qmlA 198 54.06 1ne9A 335 54.34 d.108.1.4,d.108.1.4 91839,91840 1vk9A 151 54.37 c.97.1.3 108640 175lA 164 57.07 d.2.1.3 36924 2j9oA 298 57.27 1vflA 356 57.51 c.1.9.1 120041 1uqrA 154 58.29 c.23.13.1 99779 2fb1A 226 58.60 a.4.5.68,d.113.1.6 133225,133226 1pwgA 349 59.40 e.3.1.1 104340 1gtzA 156 59.74 c.23.13.1 70539 1wcwA 261 60.00 1f75A 249 60.95 c.101.1.1 59662 168lA 164 61.22 d.2.1.3 36975 1p4kA 295 63.11 d.153.1.5 87772 2fb2A 340 64.25 1sx7A 164 64.40 d.2.1.3 112140 1hrhA 136 65.44 c.55.3.1 33577 2z07A 420 66.69 1vk6A 269 66.96 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 1jl1A 155 67.04 c.55.3.1 66821 2ahdA 165 67.95 d.159.1.7 126752 2yvpA 182 69.66 1fxxA 482 70.78 c.55.3.5 33726 2dvtA 327 71.21 c.1.9.15 131793 2hjvA 163 71.94 104lA 166 72.09 d.2.1.3 36969 2gkgA 127 73.21 2i5eA 211 73.62 3cnbA 143 75.73 1hztA 190 76.25 d.113.1.2 61459 2zf5O 497 76.54 2rjnA 154 78.32 1s8nA 205 78.97 c.23.1.1 105374 1to3A 304 79.16 c.1.10.1 107161 2nycA 144 79.41 d.37.1.1 138812 3bk2A 562 80.02 2hqbA 296 81.51 2b78A 385 82.00 b.122.1.9,c.66.1.51 128025,128026 1jl2A 156 82.38 c.55.3.1 66822 2eo5A 419 82.91 2p3rA 510 83.12 c.55.1.4,c.55.1.4 139471,139472 1x0tA 120 84.40 1tdzA 272 84.88 a.156.1.2,b.113.1.1,g.39.1.8 106787,106788,106789 1y81A 138 84.97 c.2.1.8 122731 2yrrA 353 85.23 2r14A 377 87.52