# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2nx8A 179 1.89e-27 2b3jA 159 1.93e-27 c.97.1.2 127787 1z3aA 168 3.55e-27 c.97.1.2 124396 1wwrA 171 2.53e-26 c.97.1.2 121366 1wkqA 164 2.91e-26 c.97.1.2 109393 2g84A 197 1.05e-25 c.97.1.2 134766 2a8nA 144 3.68e-25 c.97.1.2 126408 1p6oA 161 3.84e-23 c.97.1.2 94185 1vq2A 193 1.94e-22 c.97.1.2 114004 2b3zA 373 3.19e-22 c.71.1.2,c.97.1.2 127807,127808 2hxvA 360 2.16e-21 c.71.1.2,c.97.1.2 136859,136860 2hvwA 184 3.60e-21 1ctt 294 1.10e-16 1cttA 294 1.12e-16 c.97.1.1,c.97.1.1 36022,36023 3b8fA 142 2.74e-11 2fr5A 146 3.75e-10 c.97.1.1 133965 1uwzA 136 2.93e-09 c.97.1.1 108081 1r5tA 142 1.30e-08 c.97.1.1 104812 2z3hA 130 2.22e-08 1wn5A 130 3.56e-08 c.97.1.1 121082 2nytA 190 0.005326 2qjoA 341 0.1696 1vflA 356 0.8575 c.1.9.1 120041 1vhuA 211 0.9729 c.50.1.2 100703 2pqvA 154 0.9895 1rgzA 363 1.635 e.3.1.1 97457 1ryaA 160 1.665 d.113.1.5 105122 2qjtA 352 1.950 2i8tA 167 1.973 1rgyA 360 2.201 e.3.1.1 97456 3ciwA 348 2.390 1ci9A 392 2.666 e.3.1.1 64767 2b0vA 153 2.692 d.113.1.1 127650 1yqsA 349 3.078 e.3.1.1 123899 2o5fA 171 3.251 2ffyA 358 3.735 e.3.1.1 133394 3cngA 189 4.299 2q09A 416 5.733 1zkjA 359 5.891 2zf5O 497 5.916 1v8yA 170 5.948 d.113.1.1 113581 1r2zA 274 6.285 a.156.1.2,b.113.1.1,g.39.1.8 96892,96893,96894 2p3rA 510 7.648 c.55.1.4,c.55.1.4 139471,139472 2a6tA 271 7.771 a.242.1.1,d.113.1.7 126309,126310 1gkrA 458 8.254 b.92.1.3,c.1.9.6 70251,70252 2ch5A 347 8.647 c.55.1.5,c.55.1.5 130453,130454 2j9oA 298 8.839 2b06A 155 8.882 d.113.1.1 127624 1zy7A 403 9.261 1thfD 253 9.816 c.1.2.1 28535 4ubpC 570 10.20 b.92.1.1,c.1.9.2 28431,29053 2ewsA 287 10.22 2igiA 180 11.18 1zbfA 142 11.20 c.55.3.1 124850 2drwA 363 11.59 e.3.1.1 131674 2d4wA 504 12.07 2oqrA 230 12.20 2a0nA 265 12.20 c.1.2.1 125961 2pbtA 134 12.73 2nycA 144 12.75 d.37.1.1 138812 1vhzA 198 12.97 d.113.1.1 100718 2vhlA 396 13.62 1ei5A 520 14.00 b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 1k82A 268 14.55 a.156.1.2,b.113.1.1,g.39.1.8 75866,75867,75868 2icsA 379 14.58 b.92.1.8,c.1.9.14 137241,137242 2ef7A 133 15.89 2g3fA 421 16.00 2fkbA 180 16.23 d.113.1.2 133650 1tiqA 180 16.25 d.108.1.1 107010 1bu6O 501 16.36 c.55.1.4,c.55.1.4 33499,33500 1ceoA 343 17.24 c.1.8.3 28808 1qtnA 164 18.25 c.17.1.1 30999 1pvmA 184 18.51 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 2o16A 160 18.90 d.37.1.1,d.37.1.1 138869,138870 1pwgA 349 20.61 e.3.1.1 104340 1o50A 157 20.72 d.37.1.1,d.37.1.1 92478,92479 1y7rA 133 20.89 d.108.1.1 122716 2dkoA 146 21.14 2qecA 204 21.39 1vk6A 269 23.07 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 1tvfA 369 23.45 b.105.1.2,e.3.1.1 107358,107359 2gokA 429 24.42 1sznA 417 24.58 b.71.1.1,c.1.8.1 106162,106163 1yioA 208 25.37 a.4.6.2,c.23.1.1 123326,123327 1k2eA 156 25.38 d.113.1.1 72010 1gx1A 160 25.55 d.79.5.1 70675 1fxxA 482 26.19 c.55.3.5 33726 1iv3A 152 26.48 d.79.5.1 76828 3cgvA 397 26.75 2puzA 419 26.76 1t0aA 159 27.13 d.79.5.1 112192 1zc6A 305 27.31 c.55.1.5,c.55.1.5 124888,124889 2fb1A 226 27.52 a.4.5.68,d.113.1.6 133225,133226 2rihA 141 28.17 2pw9A 268 28.40 2qkmB 266 28.45 1yljA 263 28.58 1gkpA 458 28.63 b.92.1.3,c.1.9.6 70231,70232 1in4A 334 28.77 a.4.5.11,c.37.1.20 62597,62598 1pyoA 167 29.43 c.17.1.1 95370 2ew2A 316 29.75 1ys7A 233 30.72 a.4.6.1,c.23.1.1 123961,123962 2ge3A 170 31.58 d.108.1.1 135044 1z4rA 168 31.88 d.108.1.1 124444 2fvvA 194 32.10 d.113.1.1 134226 3cnbA 143 32.69 2ehgA 149 32.92 1jl1A 155 33.27 c.55.3.1 66821 1yghA 164 34.98 d.108.1.1 40802 1xrtA 467 35.02 b.92.1.3,c.1.9.6 122258,122259 1j53A 186 35.73 c.55.3.5 77076 1zbsA 291 36.74 c.55.1.5,c.55.1.5 124870,124871 2p1jA 186 36.93 1xhfA 123 37.27 c.23.1.1 122003 1mqeA 207 37.42 d.113.1.1 91394 3cfyA 137 38.59 2uzhA 165 38.89 1jl2A 156 39.17 c.55.3.1 66822 2ivnA 330 39.57 1u6mA 199 39.86 d.108.1.1 113069 1gheA 177 41.68 d.108.1.1 76222 174lA 164 41.68 d.2.1.3 36956 2guiA 194 42.39 c.55.3.5 135737 1qkkA 155 42.40 c.23.1.1 31104 1huxA 270 42.48 c.55.1.5 61278 1hztA 190 42.59 d.113.1.2 61459 2rjnA 154 45.49 1bo4A 168 45.60 d.108.1.1 40798 2ob0A 170 46.17 2amxA 376 46.98 c.1.9.1 127024 2r8cA 426 48.73 3c97A 140 49.18 3c3mA 138 49.20 1sjyA 159 50.28 d.113.1.1 98900 1zh2A 121 50.75 c.23.1.1 125069 2hb5A 164 50.91 1c1dA 355 51.52 c.2.1.7,c.58.1.1 30270,33918 1ks9A 291 51.59 a.100.1.7,c.2.1.6 68857,68858 2i5eA 211 51.89 1rk6A 496 52.13 b.92.1.6,b.92.1.6,c.1.9.11 97599,97600,97601 1h75A 81 52.87 c.47.1.1 60716 2cntA 160 53.17 1tdzA 272 53.22 a.156.1.2,b.113.1.1,g.39.1.8 106787,106788,106789 2qs8A 418 53.34 3cg4A 142 53.85 1srrA 124 54.00 c.23.1.1 31110 2e2oA 299 54.59 1eyqA 222 54.88 d.36.1.1 38534 1onwA 390 55.08 b.92.1.7,c.1.9.13 87172,87173 3ddjA 296 55.10 2fe7A 166 55.29 d.108.1.1 133325 2j7vA 298 56.44 1dxeA 256 57.09 c.1.12.5 29310 1l3aA 228 57.14 d.18.1.2 73531 2yvdA 431 57.36 1wd7A 261 57.80 c.113.1.1 114526 1acfA 125 57.84 d.110.1.1 40882 2e5vA 472 58.52 2qzjA 136 59.12 1efvB 255 60.87 c.26.2.3 31634 1bsgA 266 61.76 e.3.1.1 42729 2vlbA 251 62.14 2oq2A 261 62.61 2a9oA 120 64.57 c.23.1.1 126444 1tzyD 103 66.85 a.22.1.1 107533 2id0A 644 66.89 1tjoA 182 68.12 a.25.1.1 112461 1mb3A 124 69.89 c.23.1.1 78907 2pgsA 451 70.18 1z4eA 153 70.32 d.108.1.1 124431 2i7vA 459 70.87 2fb2A 340 72.75 2yyhA 139 73.48 2fvkA 559 74.97 b.92.1.3,c.1.9.6 134204,134205 1kgsA 225 76.11 a.4.6.1,c.23.1.1 68596,68597 2qytA 317 77.48 1zgzA 122 77.82 c.23.1.1 125065 1uc8A 280 77.99 c.30.1.6,d.142.1.7 99165,99166 2yzqA 282 78.68 2r7hA 177 79.02 1mk4A 157 79.10 d.108.1.1 84979 2ftwA 521 81.25 b.92.1.3,c.1.9.6 134083,134084 1n71A 180 81.83 d.108.1.1 85370 3b6nA 187 82.59 1vzwA 244 82.95 c.1.2.1 120553 1g0sA 209 83.81 d.113.1.1 60187 2uv4A 152 84.07 1h5yA 253 84.09 c.1.2.1 65638 1l1nA 183 84.36 b.47.1.4 73476 2yvpA 182 84.37 1sc3A 178 87.01 c.17.1.1 105416 1ne9A 335 87.15 d.108.1.4,d.108.1.4 91839,91840 2qxfA 482 87.30 2zayA 147 88.52 1wcwA 261 89.08 3cumA 302 89.27 2p5xA 230 89.72 1umnA 165 89.72 a.25.1.1 99607