# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2b3jA 159 2.53e-24 c.97.1.2 127787 2nx8A 179 4.39e-24 1z3aA 168 9.18e-24 c.97.1.2 124396 1wwrA 171 3.38e-23 c.97.1.2 121366 1wkqA 164 6.95e-23 c.97.1.2 109393 2a8nA 144 8.21e-23 c.97.1.2 126408 2g84A 197 1.11e-22 c.97.1.2 134766 1p6oA 161 3.84e-20 c.97.1.2 94185 1vq2A 193 3.68e-19 c.97.1.2 114004 2hvwA 184 5.11e-19 2b3zA 373 1.50e-17 c.71.1.2,c.97.1.2 127807,127808 2hxvA 360 2.90e-16 c.71.1.2,c.97.1.2 136859,136860 1cttA 294 4.14e-15 c.97.1.1,c.97.1.1 36022,36023 1ctt 294 4.27e-15 3b8fA 142 5.71e-09 2fr5A 146 9.30e-08 c.97.1.1 133965 1r5tA 142 2.00e-07 c.97.1.1 104812 2z3hA 130 2.19e-07 1uwzA 136 5.49e-07 c.97.1.1 108081 1wn5A 130 6.90e-06 c.97.1.1 121082 2nytA 190 0.07536 2eceA 462 0.08423 2a0nA 265 2.865 c.1.2.1 125961 2i8tA 167 3.245 2a6tA 271 3.450 a.242.1.1,d.113.1.7 126309,126310 1r2zA 274 4.021 a.156.1.2,b.113.1.1,g.39.1.8 96892,96893,96894 2z3zA 706 4.174 2bcgG 453 5.703 c.3.1.3,c.3.1.3,d.16.1.6 128282,128283,128284 1mqeA 207 5.706 d.113.1.1 91394 2nn6B 249 6.123 1ryaA 160 6.984 d.113.1.5 105122 1nthA 458 7.783 c.1.25.1 80730 2o5fA 171 8.831 2nycA 144 9.708 d.37.1.1 138812 2ivnA 330 9.775 1sjyA 159 9.909 d.113.1.1 98900 1fs5A 266 10.74 c.124.1.1 65044 1odzA 386 12.30 c.1.8.3 86889 2qjoA 341 12.34 2qm8A 337 13.19 2pqvA 154 13.51 1yqsA 349 14.66 e.3.1.1 123899 1tdzA 272 15.04 a.156.1.2,b.113.1.1,g.39.1.8 106787,106788,106789 1vflA 356 16.98 c.1.9.1 120041 2id0A 644 17.02 1fxxA 482 17.48 c.55.3.5 33726 2e58A 308 19.65 2d4wA 504 19.94 1vcdA 126 20.09 d.113.1.1 119970 2igiA 180 21.71 2yzqA 282 22.29 1peqA 714 24.09 a.98.1.1,c.7.1.2 104131,104132 2ch5A 347 25.09 c.55.1.5,c.55.1.5 130453,130454 2pnwA 380 25.24 2q09A 416 25.36 2b0vA 153 25.62 d.113.1.1 127650 2dscA 212 26.23 2b06A 155 26.47 d.113.1.1 127624 1yljA 263 27.24 2qecA 204 27.43 2vlbA 251 27.57 1k82A 268 27.78 a.156.1.2,b.113.1.1,g.39.1.8 75866,75867,75868 1yvkA 163 28.23 d.108.1.1 124101 1jl2A 156 28.40 c.55.3.1 66822 1rgyA 360 28.94 e.3.1.1 97456 1rgzA 363 30.20 e.3.1.1 97457 2hbvA 334 31.13 c.1.9.15 136320 2f6kA 307 31.32 c.1.9.15 133047 2ffyA 358 32.65 e.3.1.1 133394 2yw2A 424 32.88 2qvjA 421 33.28 2gxfA 142 33.99 2zf5O 497 34.00 2r8cA 426 34.09 3cngA 189 35.48 1ei5A 520 35.75 b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 2sli 679 35.82 1i19A 561 35.85 d.58.32.3,d.145.1.1 61522,61523 1z0wA 207 37.57 1auoA 218 37.64 c.69.1.14 34716 2qkbA 154 38.02 2icsA 379 38.07 b.92.1.8,c.1.9.14 137241,137242 1jeyA 609 39.49 b.131.1.1,c.62.1.3 90370,90371 1ee8A 266 40.73 a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 1zxxA 319 40.85 2fkbA 180 41.00 d.113.1.2 133650 2drwA 363 41.05 e.3.1.1 131674 1vhuA 211 42.33 c.50.1.2 100703 1gsoA 431 43.73 b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 1yghA 164 44.00 d.108.1.1 40802 1y8qA 346 45.29 3cfyA 137 45.78 2ozlA 365 46.87 2qxfA 482 47.03 3ddjA 296 47.43 2hzbA 333 48.25 c.143.1.1 136911 2aioA 269 48.95 d.157.1.1 126829 2rihA 141 49.34 1zy7A 403 51.62 1s1mA 545 54.63 c.23.16.1,c.37.1.10 105201,105202 1twdA 256 56.62 c.1.30.1 107397 1z41A 338 57.21 c.1.4.1 124421 2cygA 312 59.74 c.1.8.3 131025 2o9cA 342 59.78 1iyeA 309 59.99 e.17.1.1 83786 1thfD 253 60.02 c.1.2.1 28535 1yydA 357 60.73 a.93.1.1 124212 1zkjA 359 62.07 1vg0A 650 63.34 c.3.1.3,d.16.1.6 108596,108597 3b5qA 482 63.67 2dc1A 236 64.45 1w9pA 433 64.67 c.1.8.5,d.26.3.1 114412,114413 3bk2A 562 65.31 2hjhA 354 66.48 2fb1A 226 68.44 a.4.5.68,d.113.1.6 133225,133226 2as0A 396 69.69 b.122.1.9,c.66.1.51 127227,127228 2odlA 373 70.71 2ddrA 306 71.60 d.151.1.3 131398 1topA 162 72.17 a.39.1.5 17223 1iv3A 152 72.93 d.79.5.1 76828 2z43A 324 73.23 1hfuA 503 73.38 b.6.1.3,b.6.1.3,b.6.1.3 65827,65828,65829 2qgmA 445 73.48 1qh8A 478 75.11 c.92.2.3 35633 1c1dA 355 75.52 c.2.1.7,c.58.1.1 30270,33918 2fvvA 194 76.07 d.113.1.1 134226 2rdmA 132 76.17 1vhzA 198 76.50 d.113.1.1 100718 2j9oA 298 76.76 1a8lA 226 76.79 c.47.1.2,c.47.1.2 32777,32778 2qkmB 266 77.87 2rgyA 290 77.95 1pjr 724 79.96 2gopA 347 80.32 2oatA 439 80.69 c.67.1.4 34452 2hbtA 247 81.07 1eg7A 557 81.86 c.37.1.10 32241 1dbwA 126 82.25 c.23.1.1 31095 1zbfA 142 82.66 c.55.3.1 124850 2dvmA 439 83.41 2cvxA 888 83.79 1w0hA 204 84.60 c.55.3.5 114064 1p4kA 295 85.09 d.153.1.5 87772 1musA 477 85.55 c.55.3.4 79494 1rrmA 386 86.07 e.22.1.2 105081 1eyqA 222 86.38 d.36.1.1 38534 2pbtA 134 86.85 2r14A 377 87.22 1b26A 416 87.54 c.2.1.7,c.58.1.1 30232,33880 1lh0A 213 87.89 c.61.1.1 73896 1l3aA 228 87.97 d.18.1.2 73531 1tcaA 317 88.31 c.69.1.17 34726 1hztA 190 88.51 d.113.1.2 61459 3ce9A 354 89.73 2dkoA 146 89.78