# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2nx8A 179 7.98e-26 2b3jA 159 8.22e-26 c.97.1.2 127787 1z3aA 168 1.48e-25 c.97.1.2 124396 1wwrA 171 9.00e-25 c.97.1.2 121366 1wkqA 164 1.19e-24 c.97.1.2 109393 2g84A 197 2.10e-24 c.97.1.2 134766 2a8nA 144 1.49e-23 c.97.1.2 126408 1p6oA 161 4.91e-22 c.97.1.2 94185 1vq2A 193 4.81e-21 c.97.1.2 114004 2b3zA 373 1.00e-20 c.71.1.2,c.97.1.2 127807,127808 2hvwA 184 5.09e-20 2hxvA 360 5.52e-20 c.71.1.2,c.97.1.2 136859,136860 1cttA 294 7.78e-16 c.97.1.1,c.97.1.1 36022,36023 1ctt 294 8.08e-16 3b8fA 142 1.75e-10 2fr5A 146 2.16e-09 c.97.1.1 133965 1uwzA 136 1.72e-08 c.97.1.1 108081 1r5tA 142 1.05e-07 c.97.1.1 104812 2z3hA 130 1.46e-07 1wn5A 130 2.83e-07 c.97.1.1 121082 2nytA 190 0.005952 2qjoA 341 0.3250 1vhuA 211 0.5893 c.50.1.2 100703 1ryaA 160 0.9774 d.113.1.5 105122 2i8tA 167 0.995 1vflA 356 1.049 c.1.9.1 120041 2pqvA 154 1.622 3ciwA 348 3.053 1rgzA 363 3.090 e.3.1.1 97457 2b0vA 153 3.381 d.113.1.1 127650 1rgyA 360 3.396 e.3.1.1 97456 2o5fA 171 3.505 2b06A 155 3.701 d.113.1.1 127624 2ffyA 358 4.094 e.3.1.1 133394 2a6tA 271 4.094 a.242.1.1,d.113.1.7 126309,126310 1yqsA 349 4.139 e.3.1.1 123899 2zf5O 497 4.144 1ci9A 392 4.731 e.3.1.1 64767 2qjtA 352 5.640 1zy7A 403 5.844 1zkjA 359 7.394 2p3rA 510 7.991 c.55.1.4,c.55.1.4 139471,139472 1v8yA 170 8.033 d.113.1.1 113581 1r2zA 274 8.919 a.156.1.2,b.113.1.1,g.39.1.8 96892,96893,96894 3cngA 189 9.616 2fkbA 180 10.71 d.113.1.2 133650 2drwA 363 10.81 e.3.1.1 131674 2j9oA 298 10.90 2oqrA 230 10.90 3cgvA 397 11.62 2d4wA 504 12.39 2fb1A 226 13.73 a.4.5.68,d.113.1.6 133225,133226 1vhzA 198 14.43 d.113.1.1 100718 2ch5A 347 15.41 c.55.1.5,c.55.1.5 130453,130454 2fvvA 194 15.69 d.113.1.1 134226 2pbtA 134 16.06 2igiA 180 16.71 1thfD 253 18.32 c.1.2.1 28535 1mqeA 207 18.34 d.113.1.1 91394 1sznA 417 18.60 b.71.1.1,c.1.8.1 106162,106163 1yioA 208 18.67 a.4.6.2,c.23.1.1 123326,123327 2qkmB 266 18.78 2nycA 144 19.86 d.37.1.1 138812 1fxxA 482 20.34 c.55.3.5 33726 1bu6O 501 20.61 c.55.1.4,c.55.1.4 33499,33500 1qtnA 164 21.53 c.17.1.1 30999 2q09A 416 21.72 1zbfA 142 21.83 c.55.3.1 124850 2dkoA 146 21.89 1pvmA 184 23.21 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1sjyA 159 23.89 d.113.1.1 98900 1ys7A 233 24.22 a.4.6.1,c.23.1.1 123961,123962 1yghA 164 25.72 d.108.1.1 40802 2a0nA 265 26.09 c.1.2.1 125961 1dxeA 256 26.95 c.1.12.5 29310 1gkrA 458 26.99 b.92.1.3,c.1.9.6 70251,70252 1k2eA 156 27.10 d.113.1.1 72010 1k82A 268 27.37 a.156.1.2,b.113.1.1,g.39.1.8 75866,75867,75868 1xhfA 123 27.41 c.23.1.1 122003 1hztA 190 28.01 d.113.1.2 61459 2ewsA 287 28.63 3cnbA 143 28.65 174lA 164 29.31 d.2.1.3 36956 2o16A 160 29.58 d.37.1.1,d.37.1.1 138869,138870 2rihA 141 32.08 1qkkA 155 33.06 c.23.1.1 31104 3cfyA 137 33.44 1in4A 334 34.59 a.4.5.11,c.37.1.20 62597,62598 1tiqA 180 34.64 d.108.1.1 107010 2yyhA 139 34.77 1pyoA 167 35.17 c.17.1.1 95370 1yljA 263 35.67 1eyqA 222 35.94 d.36.1.1 38534 3c3mA 138 35.95 2vlbA 251 36.68 1tvfA 369 37.03 b.105.1.2,e.3.1.1 107358,107359 2qecA 204 37.87 2ef7A 133 38.39 3cg4A 142 38.44 3c97A 140 39.70 1jl1A 155 40.06 c.55.3.1 66821 4ubpC 570 40.12 b.92.1.1,c.1.9.2 28431,29053 1vk6A 269 40.50 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 1o50A 157 40.66 d.37.1.1,d.37.1.1 92478,92479 1srrA 124 41.02 c.23.1.1 31110 2yvpA 182 41.51 2rjnA 154 41.80 1zh2A 121 42.34 c.23.1.1 125069 1y7rA 133 42.38 d.108.1.1 122716 1l3aA 228 44.00 d.18.1.2 73531 1c1dA 355 44.12 c.2.1.7,c.58.1.1 30270,33918 3cumA 302 46.72 1zc6A 305 46.92 c.55.1.5,c.55.1.5 124888,124889 2qzjA 136 46.98 2a9oA 120 47.41 c.23.1.1 126444 1spvA 184 47.78 c.50.1.2 98957 1tdzA 272 48.71 a.156.1.2,b.113.1.1,g.39.1.8 106787,106788,106789 2e5vA 472 49.15 2yvdA 431 49.84 1jl2A 156 50.65 c.55.3.1 66822 1mb3A 124 51.92 c.23.1.1 78907 1vcdA 126 53.04 d.113.1.1 119970 2ge3A 170 53.05 d.108.1.1 135044 1g0sA 209 53.06 d.113.1.1 60187 2ew2A 316 53.43 1iv3A 152 54.65 d.79.5.1 76828 1j53A 186 54.65 c.55.3.5 77076 1gkpA 458 54.82 b.92.1.3,c.1.9.6 70231,70232 1tzyD 103 55.20 a.22.1.1 107533 1h75A 81 55.22 c.47.1.1 60716 1zgzA 122 55.85 c.23.1.1 125065 2uytA 489 55.99 3ddjA 296 58.03 1t0aA 159 58.83 d.79.5.1 112192 1bsgA 266 59.35 e.3.1.1 42729 1ceoA 343 60.12 c.1.8.3 28808 1gx1A 160 60.19 d.79.5.1 70675 1ne9A 335 60.38 d.108.1.4,d.108.1.4 91839,91840 1pwgA 349 62.77 e.3.1.1 104340 2g3fA 421 62.83 1ei5A 520 63.24 b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 1yd9A 193 63.41 c.50.1.2 122976 1dcfA 136 63.43 c.23.1.2 31124 2zayA 147 63.43 1v97A 1332 64.08 a.56.1.1,d.15.4.2,d.41.1.1,d.87.2.1,d.133.1.1,d.145.1.3 108436,108437,108438,108439,108440,108441 1z4rA 168 64.19 d.108.1.1 124444 1kgsA 225 64.45 a.4.6.1,c.23.1.1 68596,68597 2icsA 379 64.64 b.92.1.8,c.1.9.14 137241,137242 1tjoA 182 65.35 a.25.1.1 112461 2rdmA 132 65.37 2vhlA 396 65.53 2o1cA 150 65.82 1efvB 255 67.38 c.26.2.3 31634 1bupA 386 71.38 c.55.1.1,c.55.1.1 33377,33378 2i7vA 459 71.40 2fmlA 273 71.52 a.4.5.68,d.113.1.6 133778,133779 2id0A 644 71.58 1lr0A 129 71.85 d.212.1.1 74213 1y9wA 140 75.37 d.108.1.1 122783 2qr3A 140 76.02 2pl1A 121 78.73 1dbwA 126 79.44 c.23.1.1 31095 2qxfA 482 80.71 2amxA 376 80.98 c.1.9.1 127024 1zbsA 291 81.45 c.55.1.5,c.55.1.5 124870,124871 1h5yA 253 82.20 c.1.2.1 65638 1qstA 160 82.99 d.108.1.1 40804 1umnA 165 84.57 a.25.1.1 99607 2pw9A 268 85.07 1i12A 160 85.69 d.108.1.1 61515 2i5eA 211 85.91 1sc3A 178 86.84 c.17.1.1 105416