# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2nx8A 179 1.85e-27 2b3jA 159 2.65e-27 c.97.1.2 127787 1z3aA 168 8.24e-27 c.97.1.2 124396 2g84A 197 2.67e-26 c.97.1.2 134766 1wkqA 164 3.25e-26 c.97.1.2 109393 1wwrA 171 3.35e-26 c.97.1.2 121366 2a8nA 144 9.03e-25 c.97.1.2 126408 1p6oA 161 4.38e-23 c.97.1.2 94185 1vq2A 193 9.36e-23 c.97.1.2 114004 2b3zA 373 3.03e-22 c.71.1.2,c.97.1.2 127807,127808 2hxvA 360 1.98e-21 c.71.1.2,c.97.1.2 136859,136860 2hvwA 184 5.18e-21 1ctt 294 1.57e-16 1cttA 294 2.31e-16 c.97.1.1,c.97.1.1 36022,36023 3b8fA 142 8.35e-11 2fr5A 146 3.13e-09 c.97.1.1 133965 1uwzA 136 2.83e-08 c.97.1.1 108081 1r5tA 142 1.08e-07 c.97.1.1 104812 2z3hA 130 4.02e-07 1wn5A 130 8.34e-07 c.97.1.1 121082 2nytA 190 0.002229 2qjoA 341 0.2124 1vflA 356 0.2671 c.1.9.1 120041 1vhuA 211 0.9149 c.50.1.2 100703 2i8tA 167 0.9841 1ryaA 160 1.572 d.113.1.5 105122 2o5fA 171 2.437 2pqvA 154 2.609 2b06A 155 3.458 d.113.1.1 127624 1zkjA 359 4.751 2b0vA 153 4.790 d.113.1.1 127650 2ffyA 358 5.517 e.3.1.1 133394 2qjtA 352 5.524 1rgyA 360 5.547 e.3.1.1 97456 1zy7A 403 5.760 2qecA 204 6.611 2a6tA 271 7.222 a.242.1.1,d.113.1.7 126309,126310 1ci9A 392 7.253 e.3.1.1 64767 3cgvA 397 7.316 1v8yA 170 9.390 d.113.1.1 113581 1rgzA 363 10.21 e.3.1.1 97457 3cngA 189 10.59 2p3rA 510 11.46 c.55.1.4,c.55.1.4 139471,139472 2icsA 379 12.67 b.92.1.8,c.1.9.14 137241,137242 2fkbA 180 13.99 d.113.1.2 133650 2fvvA 194 14.66 d.113.1.1 134226 1t3qA 168 15.99 a.56.1.1,d.15.4.2 106367,106368 1r2zA 274 16.34 a.156.1.2,b.113.1.1,g.39.1.8 96892,96893,96894 2zf5O 497 16.35 2fb1A 226 16.95 a.4.5.68,d.113.1.6 133225,133226 2j9oA 298 17.29 1yqsA 349 17.98 e.3.1.1 123899 2pbtA 134 18.52 1in4A 334 19.58 a.4.5.11,c.37.1.20 62597,62598 2d4wA 504 21.30 2igiA 180 22.42 1dxeA 256 23.80 c.1.12.5 29310 3ciwA 348 24.60 1spvA 184 24.73 c.50.1.2 98957 1vhzA 198 25.27 d.113.1.1 100718 1bu6O 501 27.34 c.55.1.4,c.55.1.4 33499,33500 2b9eA 303 27.55 c.66.1.38 128124 1sjyA 159 28.89 d.113.1.1 98900 2oqrA 230 29.69 2nycA 144 30.02 d.37.1.1 138812 2yyhA 139 30.93 1mqeA 207 31.39 d.113.1.1 91394 1l3aA 228 32.04 d.18.1.2 73531 2id0A 644 32.43 1k2eA 156 33.35 d.113.1.1 72010 1thfD 253 33.49 c.1.2.1 28535 2dkoA 146 33.85 1jl2A 156 34.21 c.55.3.1 66822 1fxxA 482 34.42 c.55.3.5 33726 4ubpC 570 35.34 b.92.1.1,c.1.9.2 28431,29053 1ei5A 520 35.37 b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 2drwA 363 35.38 e.3.1.1 131674 1qtnA 164 35.58 c.17.1.1 30999 1rm6C 161 37.20 a.56.1.1,d.15.4.2 111876,111877 1zbsA 291 37.48 c.55.1.5,c.55.1.5 124870,124871 2ch5A 347 40.58 c.55.1.5,c.55.1.5 130453,130454 2o16A 160 40.71 d.37.1.1,d.37.1.1 138869,138870 1yioA 208 41.92 a.4.6.2,c.23.1.1 123326,123327 1hztA 190 42.70 d.113.1.2 61459 1qkkA 155 43.52 c.23.1.1 31104 2a0nA 265 43.64 c.1.2.1 125961 174lA 164 43.74 d.2.1.3 36956 1usyA 275 44.22 d.104.1.1 113422 1h75A 81 44.46 c.47.1.1 60716 2dc1A 236 44.85 1zbfA 142 45.06 c.55.3.1 124850 1sznA 417 46.81 b.71.1.1,c.1.8.1 106162,106163 1gkrA 458 47.00 b.92.1.3,c.1.9.6 70251,70252 2q09A 416 47.15 1jl1A 155 47.89 c.55.3.1 66821 1edgA 380 48.12 c.1.8.3 28807 2fb2A 340 48.64 2dx6A 159 49.47 1g0sA 209 49.79 d.113.1.1 60187 2fmlA 273 51.81 a.4.5.68,d.113.1.6 133778,133779 1shuX 182 52.08 c.62.1.1 98882 2o1cA 150 52.23 1tiqA 180 52.78 d.108.1.1 107010 1vk6A 269 52.88 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 1eyqA 222 53.41 d.36.1.1 38534 1yljA 263 54.23 1j53A 186 56.13 c.55.3.5 77076 2ew2A 316 57.02 1tzyD 103 59.04 a.22.1.1 107533 1yd9A 193 60.37 c.50.1.2 122976 2yx0A 342 61.02 1o50A 157 61.33 d.37.1.1,d.37.1.1 92478,92479 1acfA 125 62.65 d.110.1.1 40882 1tdzA 272 63.44 a.156.1.2,b.113.1.1,g.39.1.8 106787,106788,106789 2ef7A 133 64.46 3cnbA 143 64.61 1k82A 268 65.48 a.156.1.2,b.113.1.1,g.39.1.8 75866,75867,75868 1pyoA 167 65.50 c.17.1.1 95370 2amxA 376 67.33 c.1.9.1 127024 2rihA 141 67.99 2dvtA 327 68.17 c.1.9.15 131793 2nn6B 249 69.47 1yghA 164 69.83 d.108.1.1 40802 1to3A 304 71.05 c.1.10.1 107161 3bm4A 210 71.52 3cg4A 142 72.77 1y7rA 133 74.32 d.108.1.1 122716 1gheA 177 74.58 d.108.1.1 76222 2yyrA 67 75.20 1ys7A 233 76.38 a.4.6.1,c.23.1.1 123961,123962 2ewsA 287 77.78 2rdmA 132 78.70 2dscA 212 80.28 1dcfA 136 80.60 c.23.1.2 31124 2yvpA 182 80.99 2qzjA 136 81.01 1pvmA 184 81.52 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1xhfA 123 81.73 c.23.1.1 122003 1od6A 160 82.35 c.26.1.3 86836 2hxjA 144 82.70 2gkgA 127 83.16 1h1yA 228 84.77 c.1.2.2 76506 1zh2A 121 85.05 c.23.1.1 125069 1t3vA 124 86.22 c.55.5.1 112232 3ddjA 296 86.33 3c97A 140 87.56 1qh8B 519 88.70 c.92.2.3 35634 3c3mA 138 88.98