# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2nx8A 179 7.48e-29 2b3jA 159 1.05e-28 c.97.1.2 127787 1z3aA 168 2.89e-28 c.97.1.2 124396 1wwrA 171 1.04e-27 c.97.1.2 121366 2g84A 197 1.21e-27 c.97.1.2 134766 1wkqA 164 1.22e-27 c.97.1.2 109393 2a8nA 144 4.46e-26 c.97.1.2 126408 1p6oA 161 3.92e-24 c.97.1.2 94185 1vq2A 193 1.18e-23 c.97.1.2 114004 2b3zA 373 2.60e-23 c.71.1.2,c.97.1.2 127807,127808 2hxvA 360 1.48e-22 c.71.1.2,c.97.1.2 136859,136860 2hvwA 184 4.16e-22 1ctt 294 2.31e-17 1cttA 294 5.25e-17 c.97.1.1,c.97.1.1 36022,36023 3b8fA 142 2.40e-11 2fr5A 146 7.60e-10 c.97.1.1 133965 1uwzA 136 8.73e-09 c.97.1.1 108081 1r5tA 142 3.92e-08 c.97.1.1 104812 2z3hA 130 2.08e-07 1wn5A 130 4.36e-07 c.97.1.1 121082 2nytA 190 0.002621 2qjoA 341 0.08589 1vflA 356 0.3102 c.1.9.1 120041 1vhuA 211 0.4462 c.50.1.2 100703 2i8tA 167 1.090 1ryaA 160 1.205 d.113.1.5 105122 1rgyA 360 1.413 e.3.1.1 97456 2pqvA 154 1.576 2b06A 155 1.695 d.113.1.1 127624 1zkjA 359 1.809 2ffyA 358 1.862 e.3.1.1 133394 3ciwA 348 1.872 2o5fA 171 2.352 1ci9A 392 2.662 e.3.1.1 64767 2qjtA 352 3.041 1rgzA 363 3.162 e.3.1.1 97457 2b0vA 153 3.208 d.113.1.1 127650 2a6tA 271 4.779 a.242.1.1,d.113.1.7 126309,126310 1dxeA 256 4.913 c.1.12.5 29310 3cgvA 397 5.137 1yqsA 349 5.210 e.3.1.1 123899 2zf5O 497 5.695 1zy7A 403 5.822 1v8yA 170 6.636 d.113.1.1 113581 1qtnA 164 6.837 c.17.1.1 30999 2qecA 204 7.453 2fkbA 180 8.566 d.113.1.2 133650 2dkoA 146 8.647 2p3rA 510 9.254 c.55.1.4,c.55.1.4 139471,139472 2fvvA 194 9.791 d.113.1.1 134226 1pyoA 167 9.912 c.17.1.1 95370 2j9oA 298 10.21 1fxxA 482 10.79 c.55.3.5 33726 2pbtA 134 10.89 2fb1A 226 11.02 a.4.5.68,d.113.1.6 133225,133226 1vhzA 198 12.18 d.113.1.1 100718 4ubpC 570 13.56 b.92.1.1,c.1.9.2 28431,29053 2icsA 379 14.27 b.92.1.8,c.1.9.14 137241,137242 1k2eA 156 14.44 d.113.1.1 72010 1in4A 334 14.66 a.4.5.11,c.37.1.20 62597,62598 2nn6B 249 15.14 1yljA 263 16.42 3cngA 189 16.57 2igiA 180 16.88 2drwA 363 17.22 e.3.1.1 131674 1ei5A 520 17.39 b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 1r2zA 274 18.29 a.156.1.2,b.113.1.1,g.39.1.8 96892,96893,96894 1mqeA 207 19.62 d.113.1.1 91394 1bu6O 501 19.67 c.55.1.4,c.55.1.4 33499,33500 1spvA 184 20.29 c.50.1.2 98957 2ewsA 287 20.57 1to3A 304 21.68 c.1.10.1 107161 2nycA 144 21.95 d.37.1.1 138812 1sjyA 159 22.15 d.113.1.1 98900 1sc3A 178 22.31 c.17.1.1 105416 1hztA 190 22.44 d.113.1.2 61459 2d4wA 504 23.19 2oqrA 230 25.17 1l3aA 228 27.22 d.18.1.2 73531 2o16A 160 29.87 d.37.1.1,d.37.1.1 138869,138870 1zbfA 142 30.01 c.55.3.1 124850 2yvdA 431 30.86 2b9eA 303 32.28 c.66.1.38 128124 1zbsA 291 33.07 c.55.1.5,c.55.1.5 124870,124871 1xviA 275 33.76 c.108.1.10 116088 1mr7A 209 34.04 b.81.1.3 91430 1jl1A 155 35.15 c.55.3.1 66821 2fp3A 316 35.73 1bsgA 266 35.87 e.3.1.1 42729 1tiqA 180 36.04 d.108.1.1 107010 1xrtA 467 36.16 b.92.1.3,c.1.9.6 122258,122259 2i7vA 459 36.20 1ys7A 233 37.11 a.4.6.1,c.23.1.1 123961,123962 1gkrA 458 38.80 b.92.1.3,c.1.9.6 70251,70252 2ch5A 347 39.14 c.55.1.5,c.55.1.5 130453,130454 2ef7A 133 40.46 1thfD 253 40.67 c.1.2.1 28535 1t4oA 117 41.57 d.50.1.1 106425 2q09A 416 41.88 2fb2A 340 42.37 2pbyA 308 42.63 1g0sA 209 43.18 d.113.1.1 60187 1j53A 186 43.22 c.55.3.5 77076 1gkpA 458 43.31 b.92.1.3,c.1.9.6 70231,70232 1eyqA 222 43.76 d.36.1.1 38534 1nthA 458 43.97 c.1.25.1 80730 1pvmA 184 45.06 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1gx1A 160 45.51 d.79.5.1 70675 1o50A 157 46.40 d.37.1.1,d.37.1.1 92478,92479 1tdzA 272 47.31 a.156.1.2,b.113.1.1,g.39.1.8 106787,106788,106789 1h75A 81 47.92 c.47.1.1 60716 2dx6A 159 47.92 174lA 164 48.18 d.2.1.3 36956 1iv3A 152 49.28 d.79.5.1 76828 1t3qA 168 49.77 a.56.1.1,d.15.4.2 106367,106368 1qkkA 155 49.81 c.23.1.1 31104 1acfA 125 50.81 d.110.1.1 40882 3bqwA 351 51.04 1jl2A 156 51.18 c.55.3.1 66822 2yyhA 139 51.31 1u6mA 199 52.18 d.108.1.1 113069 1tjoA 182 52.58 a.25.1.1 112461 1yioA 208 53.74 a.4.6.2,c.23.1.1 123326,123327 2amxA 376 54.16 c.1.9.1 127024 1gheA 177 54.17 d.108.1.1 76222 1vk6A 269 57.07 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 1q33A 292 57.45 d.113.1.1 95657 2dkfA 431 59.22 1yghA 164 60.45 d.108.1.1 40802 1yd9A 193 60.52 c.50.1.2 122976 1v97A 1332 60.65 a.56.1.1,d.15.4.2,d.41.1.1,d.87.2.1,d.133.1.1,d.145.1.3 108436,108437,108438,108439,108440,108441 3cnbA 143 61.33 1umnA 165 62.84 a.25.1.1 99607 1j0aA 325 63.07 c.79.1.1 83871 1r59O 505 63.09 c.55.1.4,c.55.1.4 111697,111698 1zc6A 305 64.28 c.55.1.5,c.55.1.5 124888,124889 1t3vA 124 65.58 c.55.5.1 112232 1t0aA 159 66.17 d.79.5.1 112192 1bupA 386 66.24 c.55.1.1,c.55.1.1 33377,33378 2ffiA 288 66.53 c.1.9.15 133385 2dc1A 236 66.91 1k82A 268 67.51 a.156.1.2,b.113.1.1,g.39.1.8 75866,75867,75868 2a0nA 265 67.63 c.1.2.1 125961 2q2rA 373 68.43 2e2oA 299 69.18 1xkrA 206 71.00 d.252.1.1 115421 2qxfA 482 71.57 2yvpA 182 71.80 3cumA 302 71.99 2odlA 373 74.18 1ks9A 291 74.47 a.100.1.7,c.2.1.6 68857,68858 1vcdA 126 75.25 d.113.1.1 119970 1kgsA 225 76.41 a.4.6.1,c.23.1.1 68596,68597 2ew2A 316 76.54 2rihA 141 76.85 2fiwA 172 77.56 d.108.1.1 133539 1tzyD 103 78.04 a.22.1.1 107533 1ne9A 335 78.27 d.108.1.4,d.108.1.4 91839,91840 2j7vA 298 78.49 2rdmA 132 78.53 2hxjA 144 78.69 3cfyA 137 78.77 1edgA 380 78.94 c.1.8.3 28807 1od6A 160 79.55 c.26.1.3 86836 1lstA 239 80.47 c.94.1.1 35755 3czbA 351 81.11 1ghpA 258 82.34 e.3.1.1 60520 1sznA 417 82.49 b.71.1.1,c.1.8.1 106162,106163 1zh2A 121 82.68 c.23.1.1 125069 2ge3A 170 82.81 d.108.1.1 135044 1y7rA 133 84.40 d.108.1.1 122716 1dbwA 126 85.06 c.23.1.1 31095 1a8sA 273 85.82 c.69.1.12 34710 1g6aA 271 85.92 e.3.1.1 42704 2yyrA 67 87.74 2qytA 317 88.26 3bk2A 562 88.73 1zgzA 122 88.82 c.23.1.1 125065 1aisA 182 89.53 d.129.1.1,d.129.1.1 41288,41289