# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2nx8A 179 5.57e-27 2b3jA 159 8.32e-27 c.97.1.2 127787 1z3aA 168 1.66e-26 c.97.1.2 124396 1wwrA 171 8.90e-26 c.97.1.2 121366 2g84A 197 1.22e-25 c.97.1.2 134766 1wkqA 164 1.22e-25 c.97.1.2 109393 2a8nA 144 1.45e-24 c.97.1.2 126408 1p6oA 161 1.43e-22 c.97.1.2 94185 1vq2A 193 1.73e-22 c.97.1.2 114004 2b3zA 373 6.94e-22 c.71.1.2,c.97.1.2 127807,127808 2hxvA 360 2.27e-21 c.71.1.2,c.97.1.2 136859,136860 2hvwA 184 5.44e-21 1ctt 294 3.17e-16 1cttA 294 7.80e-16 c.97.1.1,c.97.1.1 36022,36023 3b8fA 142 1.54e-10 2fr5A 146 2.98e-09 c.97.1.1 133965 1uwzA 136 2.42e-08 c.97.1.1 108081 1r5tA 142 1.25e-07 c.97.1.1 104812 2z3hA 130 7.48e-07 1wn5A 130 1.11e-06 c.97.1.1 121082 2nytA 190 0.003407 2qjoA 341 0.1407 1vflA 356 0.3486 c.1.9.1 120041 1vhuA 211 0.4772 c.50.1.2 100703 2pqvA 154 0.5648 2i8tA 167 0.7740 1ryaA 160 0.9527 d.113.1.5 105122 2b0vA 153 1.724 d.113.1.1 127650 1rgyA 360 2.417 e.3.1.1 97456 2qjtA 352 2.775 2o5fA 171 2.826 2b06A 155 3.193 d.113.1.1 127624 2ffyA 358 3.213 e.3.1.1 133394 1zkjA 359 3.357 2icsA 379 4.292 b.92.1.8,c.1.9.14 137241,137242 1v8yA 170 4.319 d.113.1.1 113581 1ci9A 392 4.419 e.3.1.1 64767 1yqsA 349 4.673 e.3.1.1 123899 3ciwA 348 4.874 1rgzA 363 5.837 e.3.1.1 97457 2qecA 204 6.009 3cngA 189 6.109 1in4A 334 7.121 a.4.5.11,c.37.1.20 62597,62598 2p3rA 510 7.205 c.55.1.4,c.55.1.4 139471,139472 3cgvA 397 7.297 2zf5O 497 7.378 1zy7A 403 7.409 2dkoA 146 8.834 2pbtA 134 8.927 1vhzA 198 9.003 d.113.1.1 100718 2ewsA 287 9.769 2fvvA 194 10.01 d.113.1.1 134226 1qtnA 164 10.62 c.17.1.1 30999 1fxxA 482 10.85 c.55.3.5 33726 2d4wA 504 12.08 1k2eA 156 13.18 d.113.1.1 72010 1pyoA 167 13.42 c.17.1.1 95370 2fkbA 180 14.65 d.113.1.2 133650 2j9oA 298 15.30 2oqrA 230 15.77 1bu6O 501 16.28 c.55.1.4,c.55.1.4 33499,33500 1zbsA 291 16.59 c.55.1.5,c.55.1.5 124870,124871 2drwA 363 16.70 e.3.1.1 131674 2igiA 180 16.90 1ei5A 520 17.14 b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 1mqeA 207 17.24 d.113.1.1 91394 2nycA 144 18.00 d.37.1.1 138812 2a0nA 265 18.03 c.1.2.1 125961 2a6tA 271 18.60 a.242.1.1,d.113.1.7 126309,126310 1ys7A 233 18.83 a.4.6.1,c.23.1.1 123961,123962 1yljA 263 19.46 2fb1A 226 19.65 a.4.5.68,d.113.1.6 133225,133226 1thfD 253 20.48 c.1.2.1 28535 2ch5A 347 20.61 c.55.1.5,c.55.1.5 130453,130454 2q09A 416 20.64 1dxeA 256 20.74 c.1.12.5 29310 2ew2A 316 21.86 1l3aA 228 22.85 d.18.1.2 73531 2o16A 160 23.14 d.37.1.1,d.37.1.1 138869,138870 2fb2A 340 24.00 174lA 164 25.81 d.2.1.3 36956 1jl1A 155 26.79 c.55.3.1 66821 1eyqA 222 27.26 d.36.1.1 38534 1xrtA 467 27.45 b.92.1.3,c.1.9.6 122258,122259 1r2zA 274 27.69 a.156.1.2,b.113.1.1,g.39.1.8 96892,96893,96894 1sc3A 178 29.03 c.17.1.1 105416 2amxA 376 32.17 c.1.9.1 127024 4ubpC 570 32.60 b.92.1.1,c.1.9.2 28431,29053 1zc6A 305 33.68 c.55.1.5,c.55.1.5 124888,124889 1tiqA 180 34.63 d.108.1.1 107010 1sjyA 159 37.16 d.113.1.1 98900 1yghA 164 37.27 d.108.1.1 40802 1gkrA 458 37.74 b.92.1.3,c.1.9.6 70251,70252 2nn6B 249 38.30 1q33A 292 39.63 d.113.1.1 95657 1r59O 505 39.85 c.55.1.4,c.55.1.4 111697,111698 1j53A 186 40.82 c.55.3.5 77076 2fp3A 316 41.21 3cumA 302 41.39 2ef7A 133 41.41 1hztA 190 41.79 d.113.1.2 61459 2yyhA 139 42.36 1t4oA 117 42.77 d.50.1.1 106425 2qzjA 136 43.08 1yioA 208 43.19 a.4.6.2,c.23.1.1 123326,123327 1mr7A 209 43.27 b.81.1.3 91430 2guiA 194 44.84 c.55.3.5 135737 1vk6A 269 45.12 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 1tzyD 103 45.89 a.22.1.1 107533 2r8cA 426 47.02 1bsgA 266 47.33 e.3.1.1 42729 1woqA 267 47.95 c.55.1.10,c.55.1.10 109462,109463 1sznA 417 48.59 b.71.1.1,c.1.8.1 106162,106163 1spvA 184 48.74 c.50.1.2 98957 2yvpA 182 49.80 1huxA 270 50.11 c.55.1.5 61278 1to3A 304 50.73 c.1.10.1 107161 1xhfA 123 50.78 c.23.1.1 122003 2yvdA 431 51.16 1pvmA 184 51.49 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 2odlA 373 52.08 3c3mA 138 52.09 1qkkA 155 53.04 c.23.1.1 31104 1zh2A 121 54.22 c.23.1.1 125069 2i7vA 459 55.04 1zgzA 122 55.05 c.23.1.1 125065 1srrA 124 55.07 c.23.1.1 31110 1g0sA 209 55.20 d.113.1.1 60187 1tjoA 182 55.22 a.25.1.1 112461 1h75A 81 55.25 c.47.1.1 60716 2rdmA 132 58.23 1h5yA 253 58.40 c.1.2.1 65638 1vqoT 120 58.42 b.34.5.1 120381 1y7rA 133 60.13 d.108.1.1 122716 2b9eA 303 60.26 c.66.1.38 128124 1jl2A 156 60.30 c.55.3.1 66822 2id0A 644 62.74 2gkgA 127 63.34 1tdzA 272 63.78 a.156.1.2,b.113.1.1,g.39.1.8 106787,106788,106789 2rihA 141 65.11 1gkpA 458 65.65 b.92.1.3,c.1.9.6 70231,70232 3cnbA 143 66.41 2qytA 317 66.56 1vcdA 126 67.41 d.113.1.1 119970 3cg4A 142 67.41 3bqwA 351 67.59 2zayA 147 68.02 2ge3A 170 68.28 d.108.1.1 135044 2i5eA 211 68.40 1wd7A 261 68.64 c.113.1.1 114526 1bupA 386 68.72 c.55.1.1,c.55.1.1 33377,33378 2j7vA 298 69.66 1acfA 125 69.79 d.110.1.1 40882 2oq2A 261 71.48 2g3fA 421 72.22 3c97A 140 72.51 1gx1A 160 72.63 d.79.5.1 70675 1o50A 157 72.68 d.37.1.1,d.37.1.1 92478,92479 3cfyA 137 74.12 2a9oA 120 74.34 c.23.1.1 126444 1dcfA 136 74.57 c.23.1.2 31124 1kgsA 225 74.86 a.4.6.1,c.23.1.1 68596,68597 2rjnA 154 78.17 2qxfA 482 78.32 2e2oA 299 78.91 1wcwA 261 79.54 2pgfA 371 80.20 1z4eA 153 80.73 d.108.1.1 124431 3bk2A 562 82.20 1umnA 165 82.82 a.25.1.1 99607 1yavA 159 83.43 d.37.1.1,d.37.1.1 116595,116596 167lA 164 84.33 d.2.1.3 36937 1t3vA 124 84.56 c.55.5.1 112232 1iv3A 152 84.82 d.79.5.1 76828 176lA 164 85.63 d.2.1.3 36942 1nthA 458 86.55 c.1.25.1 80730 3d0rA 398 86.80 1mvoA 136 87.46 c.23.1.1 79513 1gheA 177 88.14 d.108.1.1 76222 2dkfA 431 89.00 1dbwA 126 89.06 c.23.1.1 31095 1t0aA 159 89.10 d.79.5.1 112192 2vhlA 396 89.15 1ne9A 335 89.84 d.108.1.4,d.108.1.4 91839,91840