# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2nx8A 179 4.89e-29 2b3jA 159 1.29e-28 c.97.1.2 127787 1z3aA 168 3.57e-28 c.97.1.2 124396 1wwrA 171 4.14e-27 c.97.1.2 121366 1wkqA 164 9.96e-27 c.97.1.2 109393 2g84A 197 3.00e-26 c.97.1.2 134766 2a8nA 144 2.42e-25 c.97.1.2 126408 1p6oA 161 5.88e-24 c.97.1.2 94185 1vq2A 193 5.66e-23 c.97.1.2 114004 2b3zA 373 2.69e-22 c.71.1.2,c.97.1.2 127807,127808 2hvwA 184 8.78e-22 2hxvA 360 3.32e-21 c.71.1.2,c.97.1.2 136859,136860 1ctt 294 1.13e-14 1cttA 294 1.24e-14 c.97.1.1,c.97.1.1 36022,36023 3b8fA 142 4.48e-10 2fr5A 146 2.01e-09 c.97.1.1 133965 1uwzA 136 4.02e-09 c.97.1.1 108081 1r5tA 142 8.09e-09 c.97.1.1 104812 2z3hA 130 1.58e-07 1wn5A 130 3.71e-07 c.97.1.1 121082 2nytA 190 0.002226 1zkjA 359 0.9864 1rgyA 360 1.065 e.3.1.1 97456 1ei5A 520 1.449 b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 2ffyA 358 1.753 e.3.1.1 133394 1rgzA 363 2.053 e.3.1.1 97457 2qjoA 341 2.618 1vhuA 211 2.792 c.50.1.2 100703 2dvtA 327 3.157 c.1.9.15 131793 1yqsA 349 3.772 e.3.1.1 123899 1jl1A 155 6.170 c.55.3.1 66821 1ci9A 392 8.085 e.3.1.1 64767 2o0aA 298 8.261 2b0vA 153 9.289 d.113.1.1 127650 2j9oA 298 11.69 3ciwA 348 11.78 1wyuB 474 11.78 c.67.1.7 121453 2pqvA 154 14.14 1jl2A 156 14.32 c.55.3.1 66822 2fb1A 226 14.80 a.4.5.68,d.113.1.6 133225,133226 2z07A 420 14.98 2drwA 363 16.05 e.3.1.1 131674 1qkkA 155 17.25 c.23.1.1 31104 2ehgA 149 19.56 2qjtA 352 19.74 2fug1 438 20.46 2gkgA 127 22.46 1cc1L 498 22.68 e.18.1.1 43301 1dcfA 136 24.23 c.23.1.2 31124 1qtnA 164 24.39 c.17.1.1 30999 2o5fA 171 24.93 1pwgA 349 25.64 e.3.1.1 104340 2qecA 204 25.82 2b06A 155 26.27 d.113.1.1 127624 2dkoA 146 26.54 1shuX 182 26.68 c.62.1.1 98882 3cngA 189 29.73 1lk9A 448 30.90 c.67.1.1 78057 1fobA 334 31.15 c.1.8.3 83255 1v8yA 170 32.70 d.113.1.1 113581 1mqeA 207 32.87 d.113.1.1 91394 2vdjA 301 33.12 1ryaA 160 35.12 d.113.1.5 105122 1in4A 334 35.29 a.4.5.11,c.37.1.20 62597,62598 1b00A 127 35.56 c.23.1.1 31122 1xhfA 123 35.83 c.23.1.1 122003 2c2nA 339 35.94 2rdmA 132 36.17 2fmlA 273 36.93 a.4.5.68,d.113.1.6 133778,133779 2jbaA 127 37.42 1zh2A 121 37.49 c.23.1.1 125069 1hxn 219 37.57 1spvA 184 38.19 c.50.1.2 98957 3cg4A 142 39.74 2pw9A 268 40.62 2o20A 332 40.89 1auoA 218 41.35 c.69.1.14 34716 2i8tA 167 41.43 1vhzA 198 41.70 d.113.1.1 100718 1zgzA 122 42.31 c.23.1.1 125065 1q77A 138 43.74 c.26.2.4 96023 3cs3A 277 45.04 2euiA 153 46.11 d.108.1.1 132387 1sqhA 312 46.73 d.108.1.5 98966 2oqrA 230 46.92 2qzjA 136 47.13 2j7vA 298 47.64 1z4eA 153 48.41 d.108.1.1 124431 1cc1S 283 50.11 e.19.1.1 43313 1t3qA 168 51.20 a.56.1.1,d.15.4.2 106367,106368 1yreA 197 52.83 d.108.1.1 123919 1bgvA 449 53.69 c.2.1.7,c.58.1.1 30217,33865 1mvoA 136 53.82 c.23.1.1 79513 1umdB 324 54.22 c.36.1.7,c.48.1.2 99600,99601 1qsmA 152 54.36 d.108.1.1 40808 2ax3A 502 54.45 c.72.1.4,c.104.1.1 127477,127478 2fp7B 172 55.34 b.47.1.3 133899 2bdqA 224 55.96 1mb3A 124 56.92 c.23.1.1 78907 2zayA 147 57.13 2o8nA 265 57.45 1iirA 415 58.32 c.87.1.5 62453 1sjyA 159 60.73 d.113.1.1 98900 2a9oA 120 62.09 c.23.1.1 126444 1ceoA 343 62.12 c.1.8.3 28808 2a6tA 271 62.56 a.242.1.1,d.113.1.7 126309,126310 2yvpA 182 63.36 1gheA 177 64.50 d.108.1.1 76222 1nmsA 249 64.51 c.17.1.1 85879 3bkhA 268 64.78 2fkbA 180 65.48 d.113.1.2 133650 1l1nA 183 65.78 b.47.1.4 73476 2fomB 185 66.28 b.47.1.3 133884 1g0sA 209 67.71 d.113.1.1 60187 1bsgA 266 67.81 e.3.1.1 42729 1zq6A 359 68.08 3cnbA 143 68.28 2rjnA 154 69.10 1zy7A 403 69.16 1eluA 390 70.66 c.67.1.3 34434 2zmvA 227 71.76 1jyeA 349 72.85 c.93.1.1 67455 1dbwA 126 73.17 c.23.1.1 31095 1srrA 124 75.18 c.23.1.1 31110 2pl1A 121 77.07 1r9jA 673 78.60 c.36.1.6,c.36.1.10,c.48.1.1 111722,111723,111724 1tvfA 369 78.63 b.105.1.2,e.3.1.1 107358,107359 1wd7A 261 78.89 c.113.1.1 114526 1m1zA 513 79.88 c.26.2.1,d.153.1.1 78457,78458 1pbyB 337 80.84 b.69.2.2 94422 1hztA 190 84.73 d.113.1.2 61459 2ffiA 288 84.84 c.1.9.15 133385 1mlwA 301 85.41 d.178.1.1 79289 2i7vA 459 86.77 1o4uA 285 87.38 c.1.17.1,d.41.2.1 86624,86625 1y7lA 316 88.12 c.79.1.1 122695 1w85B 324 88.27 c.36.1.7,c.48.1.2 114336,114337